RiuNet UPV Home
:
Browsing by Subject

Search RiuNet

Browse

All of RiuNet

My Account

RiuNet Help

Admin. UPV

Browsing by Subject "RNA-seq"

Now showing items 1-18 of 18

A framework for genomic sequencing on clusters of multicore and manycore processors

Martínez, Héctor; Barrachina, Sergio; Castillo, Maribel; Tárraga, Joaquín; Medina, Ignacio; Dopazo, Joaquín; Quintana Ortí, Enrique Salvador (SAGE Publications, 2018-05)

[EN] The advances in genomic sequencing during the past few years have motivated the development of fast and reliable software for DNA/RNA sequencing on current high performance architectures. Most of these efforts target ...
A genomic approach to the evolution, diversification and domestication of the genus Citrus

Borredá Fernández, Carles (Universitat Politècnica de València, 2021-11-04)

[EN] Citrus is a diverse genus within the Aurantioideae subfamily that comprises an undetermined number of pure species natively found in a vast territory extending from India to Japan and Australia. Besides pure species, ...
Analysis of the contribution of the different prefoldin complex subunits to Arabidopsis development and response

Esquinas Ariza, Rosa María (Universitat Politècnica de València, 2020-02-12)

[ES] El complejo de prefoldina se identificó originalmente en humanos como co-chaperona que ayuda a la CCT de chaperonina citosólica en el plegamiento de actina y tubulinas. Es un complejo heteromérico formado por seis ...
Análisis de la expresión alternativa de isoformas en el tiempo mediante datos de RNA-seq

Martorell Marugán, Jordi (Universitat Politècnica de València, 2015-09-04)

[ES] Los avances en tecnologías de secuenciación masiva han dado lugar al desarrollo de la transcriptómica por secuenciación, que permite analizar la expresión de genes e isoformas. El laboratorio de Genómica de la Expresión ...
Benchmarking of different omic technologies for metabolic modeling using constraint- based and functional enrichment-based methods

Araiz Sancho, Cristina (Universitat Politècnica de València, 2023-07-25)

[ES] Los enfoques multi-ómicos, que combinan información de varias capas de datos biológicos, se han vuelto cada vez más populares en los últimos años debido a su capacidad para proporcionar una comprensión profunda de los ...
Clasificación del conjunto de genes de Drosophila melanogaster atendiendo al nivel de expresión en los distintos tejidos, para la comprensión de los mecanismos moleculares

Navarrete López, Paula (Universitat Politècnica de València, 2018-09-14)

[EN] Transcriptome studies, by means of high-throughput technologies such as microarrays and next-generation sequencing (RNA-seq), have yielded, in recent years, knowledge of a large number of mechanisms that occur in ...
Comparación de herramientas de analisis de expresión diferencial en RNA-seq; concorancia a nivel genético y funcional

Fuertes Gill de Albornoz, Rubén (Universitat Politècnica de València, 2018-09-19)

[EN] The unveiling of gene function remains a major bottleneck in improving our understanding of living systems, by understanding the processes and mechanisms that are going on in the cell. Beyond classic sequence analysis, ...
Comparative Transcriptome Profile between Iberian Pig Varieties Provides New Insights into Their Distinct Fat Deposition and Fatty Acids Content

Villaplana-Velasco, Ana; Noguera, Jose Luis; Pena, Ramona Natacha; Ballester, Maria; Muñoz, Lourdes; González, Elena; Tejeda, Juan Florencio; Ibáñez-Escriche, Noelia (MDPI AG, 2021-03)

[EN] Iberian pigs are meat quality models due to their high fat content, high intramuscular fat, and oleic fatty acid composition. These parameters present great variability and are differentiated among the lines that make ...
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

Tarazona Campos, Sonia; Furió Tarí, Pedro; Turrà, David; Di Pietro, Antonio; Nueda, María José; Ferrer, Alberto; Conesa, Ana (Oxford University Press (OUP), 2015-12-02)

[EN] As the use of RNA-seq has popularized, there is an increasing consciousness of the importance of experimental design, bias removal, accurate quantification and control of false positives for proper data analysis. We ...
First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

Pomares-Viciana, T; Del Rio-Celestino, M; Roman, B; Die, J; Picó Sirvent, María Belén; Gómez, P (Springer (Biomed Central Ltd.), 2019-02-06)

[EN] Background: Zucchini fruit set can be limited due to unfavourable environmental conditions in off-seasons crops that caused ineffective pollination/fertilization. Parthenocarpy, the natural or artificial fruit development ...
Highly sensitive and ultrafast read mapping for RNA-seq analysis

Medina, I.; Tárraga, J.; Martínez, H,; Barrachina, S.; Castillo, M. I.; Paschall, J.; Salavert Torres, José; Blanquer Espert, Ignacio; Hernández García, Vicente; Quintana Ortí, Enrique Salvador; Dopazo, J. (Oxford University Press, 2016-01)

As sequencing technologies progress, the amount of data produced grows exponentially, shifting the bottleneck of discovery towards the data analysis phase. In particular, currently available mapping solutions for RNA-seq ...
Insights into the role of the berry-specific ethylene responsive factor VviERF045

Leida, Carmen; Dal Rì, Antonio; Dalla Costa, Lorenza; Gómez Jiménez, Maria Dolores; Pompili, Valerio; Sonego, Paolo; Engelen, Kristof; Masuero, Domenico; Rios Garcia, Gabino; Moser, Claudio (Frontiers Media, 2016-12)

During grape ripening, numerous transcriptional and metabolic changes are required in order to obtain colored, sweet, and flavored berries. There is evidence that ethylene, together with other signals, plays an important ...
Integration of multi-omics data to describe link between developmental exposure to pesticides and impaired neurodevelopment

Bernabeu Gómez, Elena (Universitat Politècnica de València, 2016-07-28)

[EN] In recent years the omics disciplines have made their way across a wider spectrum of research groups, thus leading to the generation of multi-omics data sets in a great number of studies. While traditional omics ...
Multi-omic data integration study of immune system alterations in the development of minimal hepatic encephalopathy in patients with liver cirrhosis

Rubio Martínez-Abarca, María Teresa (Universitat Politècnica de València, 2022-09-01)

[ES] El objetivo principal de este trabajo fue conocer las alteraciones inmunológicas asociadas a la inflamación periférica que desencadenan deterioro cognitivo en los pacientes cirróticos encefalopatía hepática mínima ...
Perfil transcriptómico en el músculo longisimus dorsi: Una comparación entre líneas de cerdo ibérico

Villaplana Velasco, Ana (Universitat Politècnica de València, 2018-09-18)

[ES] La deposición de altos niveles de grasa intramuscular, particularmente rica en ácido oleico, es característica del cerdo ibérico. Estos dos parámetros, que definen en gran parte la alta calidad de sus productos ...
PRX2 and PRX25, peroxidases regulated by COG1, are involved in seed longevity in Arabidopsis

Renard, Joan; Martínez-Almonacid, Irene; Sonntag, Annika; Molina, Isabel; Moya-Cuevas, Jose; Bissoli, Gaetano; Muñoz-Bertomeu, Jesús; Faus, Isabel; Niñoles Rodenes, Regina; Shigeto, Jun; Tsutsumi, Yuji; Gadea Vacas, José; Serrano Salom, Ramón; Bueso Rodenas, Eduardo (Blackwell Publishing, 2020-02)

[EN] Permeability is a crucial trait that affects seed longevity and is regulated by different polymers including proanthocyanidins, suberin, cutin and lignin located in the seed coat. By testing mutants in suberin transport ...
Statistical methods for transcriptomics: From microarrays to RNA-seq

Tarazona Campos, Sonia (Universitat Politècnica de València, 2015-03-30)

La transcriptómica estudia el nivel de expresión de los genes en distintas condiciones experimentales para tratar de identificar los genes asociados a un fenotipo dado así como las relaciones de regulación entre distintos ...
Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening

Zarid, Mohamed; García-Carpintero, Victor; Esteras Gómez, Cristina; Esteva, Juan; Bueso, María C.; Cañizares Sales, Joaquín; Picó Sirvent, María Belén; Monforte Gilabert, Antonio José; Fernández-Trujillo, J. Pablo (John Wiley & Sons, 2021-01-30)

[EN] BACKGROUND A near-isogenic line (NIL) of melon (SC10-2) with introgression in linkage group X was studied from harvest (at firm-ripe stage of maturity) until day 18 of postharvest storage at 20.5 degrees C together ...