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Browsing by Subject "Transcriptome"

Now showing items 1-20 of 20

A Factor Linking Floral Organ Identity and Growth Revealed by Characterization of the Tomato Mutant unfinished flower development (ufd)

Poyatos-Pertinez, Sandra; Quinet, Muriel; Ortiz-Atienza, Ana; Yuste-Lisbona, Fernando J.; Pons Puig, Clara; Gimenez, Estela; Angosto, Trinidad; Granell Richart, Antonio; Capel, Juan; Lozano, Rafael (Frontiers Media, 2016-11-07)

Floral organogenesis requires coordinated interactions between genes specifying floral organ identity and those regulating growth and size of developing floral organs. With the aim to isolate regulatory genes linking both ...
A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens

Rodrigo Tarrega, Guillermo; Carrera Montesinos, Javier; Ruiz-Ferrer, Virginia; Del Toro, F.J.; Llave, C; Voinnet, O.; Elena Fito, Santiago Fco (Public Library of Science, 2012-07)

Understanding the mechanisms by which plants trigger host defenses in response to viruses has been a challenging problem owing to the multiplicity of factors and complexity of interactions involved. The advent of genomic ...
Advances in plant virus evolution: translating evolutionary insights into better disease management

Acosta-Leal, R; Duffy, S; Xiong, Z; Hammond, R.W; Elena Fito, Santiago Fco (American Phytopathological Society, 2011-10)

[EN] Recent studies in plant virus evolution are revealing that genetic structure and behavior of virus and viroid populations can explain important pathogenic properties of these agents, such as host resistance breakdown, ...
Application of genomic tools in plant breeding

Pérez de Castro, Ana María; Vilanova Navarro, Santiago; Cañizares Sales, Joaquín; Pascual Bañuls, Laura; Blanca Postigo, José Miguel; Díez Niclós, Mª José Teresa de Jesús; Prohens Tomás, Jaime; Picó Sirvent, María Belén (Bentham Science Publishers, 2012-05)

[EN] Plant breeding has been very successful in developing improved varieties using conventional tools and methodologies. Nowadays, the availability of genomic tools and resources is leading to a new revolution of plant ...
Changes in the composition of the RNA virome mark evolutionary transitions in green plants

Mushegian, Arcady; Shipunov, Alexey; Elena Fito, Santiago Fco (BioMed Central, 2016-08-15)

Background: The known plant viruses mostly infect angiosperm hosts and have RNA or small DNA genomes. The only other lineage of green plants with a relatively well-studied virome, unicellular chlorophyte algae, is mostly ...
Different Toxicity Mechanisms for Citrinin and Ochratoxin A Revealed by Transcriptomic Analysis in Yeast

Vanacloig-Pedrós, Elena; Proft, Markus Hans; Pascual-Ahuir Giner, María Desamparados (MDPI AG, 2016-09-22)

[EN] Citrinin (CIT) and ochratoxin A (OTA) are important mycotoxins, which frequently co-contaminate foodstuff. In order to assess the toxicologic threat posed by the two mycotoxins separately or in combination, their ...
Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions

Renau Morata, Begoña; Molina Romero, Rosa Victoria; Carrillo, Laura; Cebolla Cornejo, Jaime; Sánchez Perales, Manuel; Pollmann, Stephan; Dominguez, Jose; Corrales, Alba Rocío; Flexas, J.; Vicente, Jesus; Medina, Joaquín; Nebauer, Sergio G. (Frontiers Media SA, 2017-05-03)

[EN] Cycling Dof Factor (CDF) transcription factors (TFs) are involved in multiple processes related to plant growth and development. A member of this family, CDF3, has recently been linked in Arabidopsis to the regulation ...
Efecto de la crioconservación en embriones tempranos sobre el transcriptoma hepático tanto en fase fetal como en individuos adultos de conejo (Oryctolagus cuniculus)

Lage Segura, Laura (Universitat Politècnica de València, 2019-07-16)

[ES] La vitrificación embrionaria es un proceso mediante el cual se pueden conservar embriones a largo plazo. Hasta el momento, se ha considerado una herramienta biotecnológica neutra, pero trabajos en conejo (Oryctolgus ...
How do plant viruses induce disease? Interactions and interference with host components

Pallás Benet, Vicente; Garcia, J.A (Society for General Microbiology, 2011)

[EN] Plant viruses are biotrophic pathogens that need living tissue for their multiplication and thus, in the infection-defence equilibrium, they do not normally cause plant death. In some instances virus infection may ...
Identificación y caracterización funcional del transcriptoma regulado por óxido nítrico en A. thaliana

Costa Broseta, Álvaro (Universitat Politècnica de València, 2016-05-17)

[EN] Nitric oxide (NO) regulates developmental and stress-related plant processes through still largely undefined mechanisms. To study the effect of deficient NO biosynthesis on genome-wide Arabidopsis thaliana transcriptome, ...
Identification and profiling of microRNA between back and belly Skin in Rex rabbits (Oryctolagus cuniculus)

Zhao, Bohao; Chen, Yang; Mu, Lin; Hu, Shuaishuai; Wu, Xinsheng (Universitat Politècnica de València, 2018-06-28)

[EN] Skin is an important trait for Rex rabbits and skin development is influenced by many processes, including hair follicle cycling, keratinocyte differentiation and formation of coat colour and skin morphogenesis. We ...
Integrative Transcriptomic and Metabolomic Analysis at Organ Scale Reveals Gene Modules Involved in the Responses to Suboptimal Nitrogen Supply in Tomato

Renau-Morata, Begoña; Molina Romero, Rosa Victoria; Minguet, E.G.; Cebolla Cornejo, Jaime; Carrillo, Laura; Martí-Renau, Raul; García-Carpintero, Víctor; Jiménez-Benavente, Eva; Yang, Lu; Cañizares Sales, Joaquín; Canales, Javier; Medina, Joaquín; Nebauer, Sergio G. (MDPI, 2021-07)

[EN] The development of high nitrogen use efficiency (NUE) cultivars under low N inputs is required for sustainable agriculture. To this end, in this study, we analyzed the impact of long-term suboptimal N conditions on ...
Molecular program of senescence in dry and fleshy fruit

Gómez Jiménez, Maria Dolores; Vera Sirera, Francisco José; Perez Amador, Miguel Angel (Oxford University Press (OUP), 2014-08)

[EN] Fruits of angiosperms can be divided into dry and fleshy fruits, depending on their dispersal strategies. Despite their apparently different developmental programmes, researchers have attempted to compare dry and ...
Ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

Blanca Postigo, José Miguel; Pascual Bañuls, Laura; Ziarsolo Areitioaurtena, Pello; Nuez Viñals, Fernando; Cañizares Sales, Joaquín (BioMed Central, 2011)

Background: The possibilities offered by next generation sequencing (NGS) platforms are revolutionizing biotechnological laboratories. Moreover, the combination of NGS sequencing and affordable high-throughput genotyping ...
Pathogen and Circadian Controlled 1 (PCC1) regulates polar lipid content, ABA-related responses and pathogen defense in Arabidopsis thaliana

Mir Moreno, Ricardo; Hernandez Jorda, Maria Luisa; Abou-Mansour, Eliane; Martínez-Rivas, José Manuel; Mauch, Felix; Metraux, Jean-Pierre; Leon Ramos, Jose (Oxford University Press (OUP), 2013-08)

Pathogen and Circadian Controlled 1 (PCC1) was previously characterized as a regulator of defence against pathogens and stress-activated transition to flowering. Plants expressing an RNA interference construct for the ...
Ploidy and Gene expression in clementine

Niñoles Rodenes, Regina; Aleza, Pablo; Castillo, Mª Cruz; Navarro Lucas, Luis; Ancillo, Gema (International Society for Horticultural Science (ISHS), 2015-01)

Polyploidy has long been recognized as an important force in the evolution of flowering plants and often results in novel phenotypes having advantages in adaptation and major interest for agriculture. Many crops, including ...
Regulation of the nitric oxide synthesis and signaling by posttranslational modifications and N-end rule pathway-mediated proteolysis in Arabidopsis thaliana

Costa Broseta, Álvaro (Universitat Politècnica de València, 2019-01-04)

El óxido nítrico (NO) es una molécula gaseosa altamente reactiva que regula el crecimiento y el desarrollo de las plantas así como sus respuestas de defensa. El NO se produce principalmente a partir de nitrito por las ...
The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

Herraiz García, Francisco Javier; Blanca Postigo, José Miguel; Ziarsolo Areitioaurtena, Pello; Gramazio, Pietro; Plazas Ávila, María de la O; Anderson, Gregory Joseph; Prohens Tomás, Jaime; Vilanova Navarro, Santiago (Springer (Biomed Central Ltd.), 2016)

[EN] Background Solanum sect. Basarthrum is phylogenetically very close to potatoes (Solanum sect. Petota) and tomatoes (Solanum sect. Lycopersicon), two groups with great economic importance, and for which Solanum sect. ...
Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

Blanca Postigo, José Miguel; Cañizares Sales, Joaquín; Roig Montaner, Mª Cristina; Ziarsolo Areitioaurtena, Pello; Nuez Viñals, Fernando; Picó Sirvent, María Belén (BioMed Central, 2011)

Background: Cucurbita pepo belongs to the Cucurbitaceae family. The "Zucchini" types rank among the highest-valued vegetables worldwide, and other C. pepo and related Cucurbita spp., are food staples and rich sources of ...
Transcriptome sequencing for SNP discovery across Cucumis melo

Blanca Postigo, José Miguel; Esteras Gómez, Cristina; Ziarsolo Areitioaurtena, Pello; Perez, Daniel; Fernández-Pedrosa, Victoria; Collado, Carmen; Rodríguez de Pablos, Raquel; Ballester, Alida; Roig Montaner, Mª Cristina; Cañizares Sales, Joaquín; Picó Sirvent, María Belén (BioMed Central, 2012)

Background: Melon (Cucumis melo L.) is a highly diverse species that is cultivated worldwide. Recent advances in massively parallel sequencing have begun to allow the study of nucleotide diversity in this species. The ...