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Emergence and phylodynamics of Citrus tristeza virus in Sicily, Italy

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Emergence and phylodynamics of Citrus tristeza virus in Sicily, Italy

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dc.contributor.author Davino, Salvatore es_ES
dc.contributor.author Willemsen, Anouk es_ES
dc.contributor.author Panno. Stefano es_ES
dc.contributor.author Davino, Mario es_ES
dc.contributor.author Catara, Antonino es_ES
dc.contributor.author Elena Fito, Santiago Fco es_ES
dc.contributor.author Rubio, Luis es_ES
dc.date.accessioned 2014-08-28T12:00:39Z
dc.date.available 2014-08-28T12:00:39Z
dc.date.issued 2013-06
dc.identifier.issn 1932-6203
dc.identifier.uri http://hdl.handle.net/10251/39275
dc.description.abstract [EN] Citrus tristeza virus (CTV) outbreaks were detected in Sicily island, Italy for the first time in 2002. To gain insight into the evolutionary forces driving the emergence and phylogeography of these CTV populations, we determined and analyzed the nucleotide sequences of the p20 gene from 108 CTV isolates collected from 2002 to 2009. Bayesian phylogenetic analysis revealed that mild and severe CTV isolates belonging to five different clades (lineages) were introduced in Sicily in 2002. Phylogeographic analysis showed that four lineages co-circulated in the main citrus growing area located in Eastern Sicily. However, only one lineage (composed of mild isolates) spread to distant areas of Sicily and was detected after 2007. No correlation was found between genetic variation and citrus host, indicating that citrus cultivars did not exert differential selective pressures on the virus. The genetic variation of CTV was not structured according to geographical location or sampling time, likely due to the multiple introduction events and a complex migration pattern with intense co- and recirculation of different lineages in the same area. The phylogenetic structure, statistical tests of neutrality and comparison of synonymous and nonsynonymous substitution rates suggest that weak negative selection and genetic drift following a rapid expansion may be the main causes of the CTV variability observed today in Sicily. Nonetheless, three adjacent amino acids at the p20 N-terminal region were found to be under positive selection, likely resulting from adaptation events. es_ES
dc.description.sponsorship A.W. and S.F.E. were supported by grant BFU2012-30805 from the Spanish Secretaria de Estado de Investigacion, Desarrollo e Innovacion and by a grant 22371 from the John Templeton Foundation. The opinions expressed in this publication are those of the authors and do not necessarily reflect the views of the John Templeton Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
dc.language Inglés es_ES
dc.publisher Public Library of Science es_ES
dc.relation.ispartof PLoS ONE es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Maximum-likelihood es_ES
dc.subject Mosaic-virus es_ES
dc.subject Evolutionary dynamics es_ES
dc.subject Phylogenetic analyses es_ES
dc.subject Population-structure es_ES
dc.subject Molecular evolution es_ES
dc.subject Genetic-variation es_ES
dc.subject DNA polymorphism es_ES
dc.subject Cross-protection es_ES
dc.subject Host passage es_ES
dc.title Emergence and phylodynamics of Citrus tristeza virus in Sicily, Italy es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1371/journal.pone.0066700
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//BFU2012-30805/ES/EVOLUTIONARY SYSTEMS VIROLOGY: EPISTASIS AND THE RUGGEDNESS OF ADAPTIVE LANDSCAPES, MUTATIONS IN REGULATORY SEQUENCES, AND THE HOST DETERMINANTS OF VIRAL FITNESS/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/JTF//22371//Experimental evolution of genome architecture and complexity in RNA virus/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Davino, S.; Willemsen, A.; Panno. Stefano; Davino, M.; Catara, A.; Elena Fito, SF.; Rubio, L. (2013). Emergence and phylodynamics of Citrus tristeza virus in Sicily, Italy. PLoS ONE. 8:66700-66700. doi:10.1371/journal.pone.0066700 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1371/journal.pone.0066700 es_ES
dc.description.upvformatpinicio 66700 es_ES
dc.description.upvformatpfin 66700 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 8 es_ES
dc.relation.senia 260388
dc.identifier.pmid 23818960 en_EN
dc.identifier.pmcid PMC3688570 en_EN
dc.contributor.funder Ministerio de Economía y Competitividad
dc.contributor.funder John Templeton Foundation
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