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Identification of transcription factors potencially involved in the juvenile to adult phase transition in Citrus

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Identification of transcription factors potencially involved in the juvenile to adult phase transition in Citrus

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dc.contributor.author Castillo, M.C. es_ES
dc.contributor.author Forment Millet, José Javier es_ES
dc.contributor.author Gadea Vacas, José es_ES
dc.contributor.author Carrasco, JL es_ES
dc.contributor.author Juarez, J. es_ES
dc.contributor.author Navarro, L. es_ES
dc.contributor.author Ancillo, G. es_ES
dc.date.accessioned 2016-01-21T13:49:59Z
dc.date.available 2016-01-21T13:49:59Z
dc.date.issued 2013-11
dc.identifier.issn 0305-7364
dc.identifier.uri http://hdl.handle.net/10251/60112
dc.description.abstract [EN] The juvenile to adult transition (JAT) in higher plants is required for them to reach reproductive competence. However, it is a poorly understood process in woody plants, where only a few genes have been definitely identified as being involved in this transition. This work aims at increasing our understanding of the mechanisms regulating the JAT in citrus. Juvenile and adult plants from Pineapple sweet orange (Citrus sinensis) and Rough lemon (C. jambhiri) were used to screen for differentially expressed transcription factors (TFs) using a 115K microarray developed on the basis of the CitrusTF database. Murcott tangor (C. reticulata C. sinensis) and Duncan grapefruit (C. paradisi) were incorporated into the quantitative real-time reverse transcriptionPCR validation in order to select those genes whose phase-specific regulation was common to the four species. A browsable web database has been created with information about the structural and functional annotation related to 1152 unigenes of putative citrus TFs (CTFs). This database constitutes a valuable resource for research on transcriptional regulation and comparative genomics. Moreover, a microarray has been developed and used that contains these putative CTFs, in order to identify eight genes that showed differential expression in juvenile and adult meristems of four different species of citrus. Those genes have been characterized, and their expression pattern in vegetative and reproductive tissues has been analysed. Four of them are MADS-box genes, a family of TFs involved in developmental processes, whereas another one resembles MADS-box genes but lacks the MADS box itself. The other three showed high partial sequence similarity restricted to specific Arabidopsis protein domains but negligible outside those domains. The work presented here indicates that the JAT in citrus could be controlled by mechanisms that are in part common to those of Arabidopsis, but also somehow different, since specific factors without Arabidopsis orthologues have also been characterized. The potential involvement of the genes in the JAT is discussed. es_ES
dc.description.sponsorship The Bioinformatics Core Service of the IBMCP (UPV-CSIC) is acknowledged for its help in bioinformatic analyses. This work was supported by Conselleria de Agricultura, Pesca y Alimentacion of Generalitat Valenciana [Proy_IVIA09/03] to G.A., and by the Ministry of 'Economia y Competividad'-Fondo Europeo de Desarrollo Regional (FEDER) [AGL2011-26490] and the Ministry of 'Ciencia e Innovacion' [AGL2008-01491] and Prometeo II 2013/008.
dc.language Inglés es_ES
dc.publisher Oxford University Press (OUP): Policy B - Oxford Open Option A es_ES
dc.relation.ispartof Annals of Botany es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Citrus sinensis es_ES
dc.subject Citrus jambhiri es_ES
dc.subject Citrus reticulata es_ES
dc.subject Citrus paradisi es_ES
dc.subject Database es_ES
dc.subject Differential gene expression es_ES
dc.subject Juvenile to adult transition es_ES
dc.subject Juvenility es_ES
dc.subject Transcription factor es_ES
dc.subject JAT es_ES
dc.subject.classification BIOQUIMICA Y BIOLOGIA MOLECULAR es_ES
dc.title Identification of transcription factors potencially involved in the juvenile to adult phase transition in Citrus es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1093/aob/mct211
dc.relation.projectID info:eu-repo/grantAgreement/IVIA//IVIA09%2F03/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//AGL2011-26490/ES/MEJORA DE CITRICOS Y POLIPLOIDIA: APROXIMACIONES GENETICAS Y GENOMICAS PARA LA OBTENCION DE VARIEDADES TRIPLOIDES Y PORTAINJERTOS TETRAPLOIDES/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//AGL2008-01491/ES/IDENTIFICACION, DIFUSION Y CARACTERIZACION DE VIROIDES DEL GENERO POSPIVIROIDE./ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/GVA//PROMETEOII%2F2013%2F008/
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.description.bibliographicCitation Castillo, M.; Forment Millet, JJ.; Gadea Vacas, J.; Carrasco, J.; Juarez, J.; Navarro, L.; Ancillo, G. (2013). Identification of transcription factors potencially involved in the juvenile to adult phase transition in Citrus. Annals of Botany. 112(7):1371-1381. https://doi.org/10.1093/aob/mct211 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1093/aob/mct211 es_ES
dc.description.upvformatpinicio 1371 es_ES
dc.description.upvformatpfin 1381 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 112 es_ES
dc.description.issue 7 es_ES
dc.relation.senia 254965 es_ES
dc.identifier.pmid 24052558
dc.identifier.pmcid PMC3806540 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación
dc.contributor.funder Institut Valencià d'Investigacions Agràries
dc.contributor.funder Generalitat Valenciana
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