CARBONELL, ALBERTO; Fahlgren, Noah; García-Ruíz, Hernan; Gilbert, Kerrigan B.; Montgomery, Taiowa A.; Nguyen, Tammy; Cuperus, Josh T.; Carrington, James C.(American Society of Plant Biologists, 2012-09)
[EN] In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are often silenced through direct cleavage (slicing), ...
CARBONELL, ALBERTO; Fahlgren, Noah; Mitchell, Skyler; Cox, Kevin L., Jr.; Reilly, Kevin C.; Mockler, Todd C.; Carrington, James C.(Blackwell Publishing, 2015-06)
[EN] Artificial microRNAs (amiRNAs) are used for selective gene silencing in plants. However, current methods to produce amiRNA constructs for silencing transcripts in monocot species are not suitable for simple, cost-effective ...
CARBONELL, ALBERTO; Takeda, Atsushi; Fahlgren, Noah; Johnson, Simon C.; Cuperus, Josh T.; Carrington, James C.(American Society of Plant Biologists, 2014-05)
[EN] Artificial microRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) are used for small RNA-based, specific gene silencing or knockdown in plants. Current methods to generate amiRNA or ...
Fahlgren, Noah; Hill, Steven T.; Carrington, James C.; CARBONELL, ALBERTO(Oxford University Press, 2016-01-01)
[EN] The Plant Small RNA Maker Site (P-SAMS) is a web tool for the simple and automated
design of artificial miRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syntasiRNAs)
for efficient and specific ...
Gilbert, Kerrigan B.; Fahlgren, Noah; Kasschau, Kristin D.; Chapman, Elisabeth J.; Carrington, James C.; CARBONELL, ALBERTO(Bio-Protocol, 2014-11-05)
[EN] High-throughput sequencing is a powerful tool for exploring small RNA populations in
plants. The ever-increasing output from an Illumina Sequencing System allows for multiplexing
multiple samples while still obtaining ...
Garcia-Ruiz, Hernan; CARBONELL, ALBERTO; Hoyer, J. Steen; Fahlgren, Noah; Gilbert, Kerrigan B.; Takeda, Atsushi; Giampetruzzi, Annalisa; García Ruíz, Maira T.; McGinn, Michaela G.; Lowery, Nicholas; Martínez Baladejo, María T.; Carrington, James C.(Public Library of Science, 2015-03)
[EN] In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a ...
Cuperus, Josh T.; CARBONELL, ALBERTO; Fahlgren, Noah; Garcia-Ruiz, Hernan; Burke, Russell T.; Takeda, Atsushi; Sullivan, Christopher M.; Gilbert, Sunny D.; Montgomery, Taiowa A.; Carrington, James C.(Nature Publishing Group, 2010-08)
[EN] NA interference pathways can involve amplification of secondary siRNAs by RNA-dependent RNA polymerases. In plants, RDR6-dependent secondary siRNAs arise from transcripts targeted by some microRNAs (miRNAs). Here, ...