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Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary

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Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary

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dc.contributor.author Sen, L es_ES
dc.contributor.author Fares Riaño, Mario Ali es_ES
dc.contributor.author Su, YJ es_ES
dc.contributor.author Wang, T es_ES
dc.date.accessioned 2016-05-12T07:22:44Z
dc.date.available 2016-05-12T07:22:44Z
dc.date.issued 2012-08-16
dc.identifier.issn 1471-2148
dc.identifier.uri http://hdl.handle.net/10251/63945
dc.description.abstract Background: The photosynthetic oxygen-evolving photo system II (PS II) produces almost the entire oxygen in the atmosphere. This unique biochemical system comprises a functional core complex that is encoded by psbA and other genes. Unraveling the evolutionary dynamics of this gene is of particular interest owing to its direct role in oxygen production. psbA underwent gene duplication in leptosporangiates, in which both copies have been preserved since. Because gene duplication is often followed by the non-fictionalization of one of the copies and its subsequent erosion, preservation of both psbA copies pinpoint functional or regulatory specialization events. The aim of this study was to investigate the molecular evolution of psbA among fern lineages. Results: We sequenced psbA, which encodes D1 protein in the core complex of PSII, in 20 species representing 8 orders of extant ferns; then we searched for selection and convolution signatures in psbA across the 11 fern orders. Collectively, our results indicate that: (1) selective constraints among D1 protein relaxed after the duplication in 4 leptosporangiate orders; (2) a handful positively selected codons were detected within species of single copy psbA, but none in duplicated ones; (3) a few sites among D1 protein were involved in co-evolution process which may intimate significant functional/structural communications between them. Conclusions: The strong competition between ferns and angiosperms for light may have been the main cause for a continuous fixation of adaptive amino acid changes in psbA, in particular after its duplication. Alternatively, a single psbA copy may have undergone bursts of adaptive changes at the molecular level to overcome angiosperms competition. The strong signature of positive Darwinian selection in a major part of D1 protein is testament to this. At the same time, species own two psbA copies hardly have positive selection signals among the D1 protein coding sequences. In this study, eleven co-evolving sites have been detected via different molecules, which may be more important than others. es_ES
dc.description.sponsorship We thank Dr. Yefu Wang at State Key Laboratory of Virology, College of Life Sciences, Wuhan University, China, for the guidance for wording, and we also thank Bo Wang and Dr. Lei Gao at the Wuhan Botanical Garden, Chinese Academy of Sciences, China, for the experimental assistance. We thank Dr. Jianqiang Li at the Wuhan Botanical Garden, Chinese Academy of Sciences, China, for the advices on species sampling. We appreciate two anonymous reviewers and other editors for their helpful suggestions. The present work was financially supported by the National Nature Science Foundation of China (No. 30970290, 31070594), and by the Knowledge Innovation Program of the Chinese Academy of Sciences (No. KSCX2-EW-J-20, KSCX2-YW-Z-0940). Dr. Mario A. Fares was supported by Spanish Ministerio de Ciencia e Inovacion (No. BFU2009-12022) and Research Frontiers Program (No. 10/RFP/GEN2685) from Science Foundation Ireland. en_EN
dc.language Inglés es_ES
dc.publisher BioMed Central es_ES
dc.relation.ispartof BMC Evolutionary Biology es_ES
dc.rights Reconocimiento (by) es_ES
dc.title Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1186/1471-2148-12-145
dc.relation.projectID info:eu-repo/grantAgreement/NSFC//31070594/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/SFI/SFI Research Frontiers Programme (RFP)/10/RFP/GEN2685/IE/ en_EN
dc.relation.projectID info:eu-repo/grantAgreement/CAS//KSCX2-YW-Z-0940/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/CAS//KSCX2-EW-J-20/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BFU2009-12022/ES/Impacto De La Duplicacion Genomica En La Innovacion Y Geometria Funcional De Arabidopsis Thaliana/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/NSFC//30970290/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Sen, L.; Fares Riaño, MA.; Su, Y.; Wang, T. (2012). Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary. BMC Evolutionary Biology. 12(145):1-13. https://doi.org/10.1186/1471-2148-12-145 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1186/1471-2148-12-145 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 13 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 12 es_ES
dc.description.issue 145 es_ES
dc.relation.senia 233019 es_ES
dc.identifier.pmid 22899792 en_EN
dc.identifier.pmcid PMC3499216 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Science Foundation Ireland
dc.contributor.funder National Natural Science Foundation of China es_ES
dc.contributor.funder Chinese Academy of Sciences es_ES
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