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Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico

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Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico

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Nombre: Rêgo;Elena-Jiméne ...
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dc.contributor.author Rêgo, TJS es_ES
dc.contributor.author Elena-Jiménez, Georgina es_ES
dc.contributor.author Correia, Kamila C. es_ES
dc.contributor.author Tovar-Pedraza J.M. es_ES
dc.contributor.author Câmara, Marcos P. S. es_ES
dc.contributor.author Armengol Fortí, Josep es_ES
dc.contributor.author Michereff, Sami J. es_ES
dc.contributor.author Berbegal Martinez, Monica es_ES
dc.date.accessioned 2020-04-17T12:48:50Z
dc.date.available 2020-04-17T12:48:50Z
dc.date.issued 2019-06 es_ES
dc.identifier.issn 0032-0862 es_ES
dc.identifier.uri http://hdl.handle.net/10251/140861
dc.description This is the peer reviewed version of the following article: Rêgo, T.J.S., Elena, G., Correia, K.C., Tovar‐Pedraza, J.M., Câmara, M.P.S., Armengol, J., Michereff, S.J. and Berbegal, M. (2019), Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico. Plant Pathol, 68: 930-938. doi:10.1111/ppa.12997 , which has been published in final form athttps://doi.org/10.1111/ppa.12997. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. es_ES
dc.description.abstract [EN] Lasiodiplodia theobromae is one of the most frequent fungal pathogens associated with dieback, gummosis, leaf spot, stem-end rot and fruit rot symptoms in cashew, mango, papaya and grapevine. In this study, the variation in the genetic diversity of 117 L. theobromae isolates from northeastern Brazil (n = 100) and Mexico (n = 17), which were collected from these four crops, was analysed using microsatellite markers. The results revealed low genetic diversity among L. theobromae populations and the existence of two genetic groups. All Mexican isolates were grouped with Brazilian isolates, suggesting a low level of differentiation between these populations. Furthermore, no evident host or climate-based population differentiation was observed for L. theobromae in Brazil. The populations studied were mostly clonal, but additional studies are needed to better understand the mode of reproduction of the pathogen. The low genetic diversity of L. theobromae populations in northeastern Brazil suggests that resistant cultivars could be used as a durable management strategy to reduce the impact of the diseases caused by this pathogen. es_ES
dc.description.sponsorship This study was financially supported by CoordenacAo de Aperfeicoamento de Pessoal de Nivel Superior - CAPES, 'Ciencia sem Fronteiras - CAPES' (number 88881.132070/2016-01) and the Universitat Politecnica de Valencia. G.E. was supported by the Spanish postdoctoral grant Juan de la Cierva-Formacion. The authors thank Maela Leon and Valentin Garrigues (Universitat Politecnica de Valencia, Valencia, Spain) for laboratory support. The authors declare no conflicts of interest. es_ES
dc.language Inglés es_ES
dc.publisher Blackwell Publishing es_ES
dc.relation.ispartof Plant Pathology es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Microsatellites es_ES
dc.subject Population biology es_ES
dc.subject SSR es_ES
dc.subject Variability: es_ES
dc.subject.classification BOTANICA es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.title Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1111/ppa.12997 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/CAPES//88881.132070%2F2016-01/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Ecosistemas Agroforestales - Departament d'Ecosistemes Agroforestals es_ES
dc.description.bibliographicCitation Rêgo, T.; Elena-Jiménez, G.; Correia, KC.; Tovar-Pedraza J.M.; Câmara, MPS.; Armengol Fortí, J.; Michereff, SJ.... (2019). Genetic diversity and population structure of Lasiodiplodia theobromae from different hosts in northeastern Brazil and Mexico. Plant Pathology. 68(5):930-938. https://doi.org/10.1111/ppa.12997 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1111/ppa.12997 es_ES
dc.description.upvformatpinicio 930 es_ES
dc.description.upvformatpfin 938 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 68 es_ES
dc.description.issue 5 es_ES
dc.relation.pasarela S\387623 es_ES
dc.contributor.funder Universitat Politècnica de València es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
dc.contributor.funder Coordenaçao de Aperfeiçoamento de Pessoal de Nível Superior, Brasil es_ES
dc.description.references Agapow, P.-M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1(1-2), 101-102. doi:10.1046/j.1471-8278.2000.00014.x es_ES
dc.description.references Alvares, C. A., Stape, J. L., Sentelhas, P. C., de Moraes Gonçalves, J. L., & Sparovek, G. (2013). Köppen’s climate classification map for Brazil. Meteorologische Zeitschrift, 22(6), 711-728. doi:10.1127/0941-2948/2013/0507 es_ES
dc.description.references Archer, F. I., Adams, P. E., & Schneiders, B. B. (2016). stratag: Anrpackage for manipulating, summarizing and analysing population genetic data. Molecular Ecology Resources, 17(1), 5-11. doi:10.1111/1755-0998.12559 es_ES
dc.description.references ARNAUD-HAOND, S., DUARTE, C. M., ALBERTO, F., & SERRÃO, E. A. (2007). Standardizing methods to address clonality in population studies. Molecular Ecology, 16(24), 5115-5139. doi:10.1111/j.1365-294x.2007.03535.x es_ES
dc.description.references Begoude Boyogueno, A. D., Slippers, B., Perez, G., Wingfield, M. J., & Roux, J. (2012). High gene flow and outcrossing within populations of two cryptic fungal pathogens on a native and non-native host in Cameroon. Fungal Biology, 116(3), 343-353. doi:10.1016/j.funbio.2011.12.001 es_ES
dc.description.references Berbegal, M., Pérez-Sierra, A., Armengol, J., & Grünwald, N. J. (2013). Evidence for Multiple Introductions and Clonality in Spanish Populations of Fusarium circinatum. Phytopathology®, 103(8), 851-861. doi:10.1094/phyto-11-12-0281-r es_ES
dc.description.references BRUVO, R., MICHIELS, N. K., D’SOUZA, T. G., & SCHULENBURG, H. (2004). A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level. Molecular Ecology, 13(7), 2101-2106. doi:10.1111/j.1365-294x.2004.02209.x es_ES
dc.description.references Burgess, T., Wingfield, M. J., & Wingfield, B. D. (2003). Development and characterization of microsatellite loci for the tropical tree pathogen Botryosphaeria rhodina. Molecular Ecology Notes, 3(1), 91-94. doi:10.1046/j.1471-8286.2003.00361.x es_ES
dc.description.references Burgess, T. I., Barber, P. A., Mohali, S., Pegg, G., de Beer, W., & Wingfield, M. J. (2006). Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia, 98(3), 423-435. doi:10.3852/mycologia.98.3.423 es_ES
dc.description.references Burgess, T. I., Crous, C. J., Slippers, B., Hantula, J., & Wingfield, M. J. (2016). Tree invasions and biosecurity: eco-evolutionary dynamics of hitchhiking fungi. AoB Plants, 8, plw076. doi:10.1093/aobpla/plw076 es_ES
dc.description.references Correia, K. C., Silva, M. A., de Morais, M. A., Armengol, J., Phillips, A. J. L., Câmara, M. P. S., & Michereff, S. J. (2015). Phylogeny, distribution and pathogenicity ofLasiodiplodiaspecies associated with dieback of table grape in the main Brazilian exporting region. Plant Pathology, 65(1), 92-103. doi:10.1111/ppa.12388 es_ES
dc.description.references Coutinho, I. B. L., Freire, F. C. O., Lima, C. S., Lima, J. S., Gonçalves, F. J. T., Machado, A. R., … Cardoso, J. E. (2016). Diversity of genusLasiodiplodiaassociated with perennial tropical fruit plants in northeastern Brazil. Plant Pathology, 66(1), 90-104. doi:10.1111/ppa.12565 es_ES
dc.description.references Cruywagen, E. M., Slippers, B., Roux, J., & Wingfield, M. J. (2017). Phylogenetic species recognition and hybridisation in Lasiodiplodia : A case study on species from baobabs. Fungal Biology, 121(4), 420-436. doi:10.1016/j.funbio.2016.07.014 es_ES
dc.description.references Dray, S., & Dufour, A.-B. (2007). Theade4Package: Implementing the Duality Diagram for Ecologists. Journal of Statistical Software, 22(4). doi:10.18637/jss.v022.i04 es_ES
dc.description.references PINAUD, D., & WEIMERSKIRCH, H. (2007). At-sea distribution and scale-dependent foraging behaviour of petrels and albatrosses: a comparative study. Journal of Animal Ecology, 76(1), 9-19. doi:10.1111/j.1365-2656.2006.01186.x es_ES
dc.description.references FAO 2018.FAOSTAT. [http://www.fao.org/faostat/en/#data/QC]. Accessed 8 August 2018. es_ES
dc.description.references Grünwald, N. J., Goodwin, S. B., Milgroom, M. G., & Fry, W. E. (2003). Analysis of Genotypic Diversity Data for Populations of Microorganisms. Phytopathology®, 93(6), 738-746. doi:10.1094/phyto.2003.93.6.738 es_ES
dc.description.references Grünwald, N. J., Everhart, S. E., Knaus, B. J., & Kamvar, Z. N. (2017). Best Practices for Population Genetic Analyses. Phytopathology®, 107(9), 1000-1010. doi:10.1094/phyto-12-16-0425-rvw es_ES
dc.description.references Hedrick, P. W. (2005). A STANDARDIZED GENETIC DIFFERENTIATION MEASURE. Evolution, 59(8), 1633-1638. doi:10.1111/j.0014-3820.2005.tb01814.x es_ES
dc.description.references IBGE 2018.PAM 2016: valor da produção agrícola nacional foi 20% maior do que em 2015. Instituto Brasileiro de Geografia e Estatística. [https://agenciadenoticias.ibge.gov.br/agencia-noticias/2013-agencia-de-noticias/releases/16814‐pam‐2016‐valor‐da‐producao‐agricola‐nacional‐foi‐20‐maior‐do‐que‐em‐2015.ht ml]. Accessed 8 August 2018. es_ES
dc.description.references Jombart, T. (2008). adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics, 24(11), 1403-1405. doi:10.1093/bioinformatics/btn129 es_ES
dc.description.references Jombart, T., Devillard, S., & Balloux, F. (2010). Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11(1), 94. doi:10.1186/1471-2156-11-94 es_ES
dc.description.references Kamvar, Z. N., Brooks, J. C., & Grünwald, N. J. (2015). Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Frontiers in Genetics, 6. doi:10.3389/fgene.2015.00208 es_ES
dc.description.references Marques, M. W., Lima, N. B., de Morais, M. A., Barbosa, M. A. G., Souza, B. O., Michereff, S. J., … Câmara, M. P. S. (2013). Species of Lasiodiplodia associated with mango in Brazil. Fungal Diversity, 61(1), 181-193. doi:10.1007/s13225-013-0231-z es_ES
dc.description.references BEVAN, J. R., CLARKE, D. D., & CRUTE, I. R. (1993). Resistance to Erysiphe fischeri in two populations of Senecio vulgaris. Plant Pathology, 42(4), 636-646. doi:10.1111/j.1365-3059.1993.tb01544.x es_ES
dc.description.references Mehl, J., Wingfield, M., Roux, J., & Slippers, B. (2017). Invasive Everywhere? Phylogeographic Analysis of the Globally Distributed Tree Pathogen Lasiodiplodia theobromae. Forests, 8(5), 145. doi:10.3390/f8050145 es_ES
dc.description.references BARRETT, L. G., & BRUBAKER, C. L. (2006). Isolation and characterization of microsatellite loci from the rust pathogen, Melampsora lini. Molecular Ecology Notes, 6(3), 930-932. doi:10.1111/j.1471-8286.2006.01404.x es_ES
dc.description.references Mohali, S., Burgess, T. I., & Wingfield, M. J. (2005). Diversity and host association of the tropical tree endophyte Lasiodiplodia theobromae revealed using simple sequence repeat markers. Forest Pathology, 35(6), 385-396. doi:10.1111/j.1439-0329.2005.00418.x es_ES
dc.description.references Netto, M. S. B., Assunção, I. P., Lima, G. S. A., Marques, M. W., Lima, W. G., Monteiro, J. H. A., … Câmara, M. P. S. (2014). Species of Lasiodiplodia associated with papaya stem-end rot in Brazil. Fungal Diversity, 67(1), 127-141. doi:10.1007/s13225-014-0279-4 es_ES
dc.description.references Netto, M. S. B., Lima, W. G., Correia, K. C., da Silva, C. F. B., Thon, M., Martins, R. B., … Câmara, M. P. S. (2017). Analysis of phylogeny, distribution, and pathogenicity of Botryosphaeriaceae species associated with gummosis of Anacardium in Brazil, with a new species of Lasiodiplodia. Fungal Biology, 121(4), 437-451. doi:10.1016/j.funbio.2016.07.006 es_ES
dc.description.references Phillips, A. J. L., Alves, A., Abdollahzadeh, J., Slippers, B., Wingfield, M. J., Groenewald, J. Z., & Crous, P. W. (2013). The Botryosphaeriaceae: genera and species known from culture. Studies in Mycology, 76, 51-167. doi:10.3114/sim0021 es_ES
dc.description.references Santos, P. H. D., Carvalho, B. M., Aguiar, K. P., Aredes, F. A. S., Poltronieri, T. P. S., Vivas, J. M. S., … Silveira, S. F. (2017). Phylogeography and population structure analysis reveals diversity by mutations in Lasiodiplodia theobromae with distinct sources of selection. Genetics and Molecular Research, 16(2). doi:10.4238/gmr16029681 es_ES
dc.description.references Schuelke, M. (2000). An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology, 18(2), 233-234. doi:10.1038/72708 es_ES
dc.description.references Shah, M.-U.-D., Verma, K. S., Singh, K., & Kaur, R. (2011). Genetic diversity and gene flow estimates among three populations ofBotryodiplodia theobromaecausing die-back and bark canker of pear in Punjab. Archives Of Phytopathology And Plant Protection, 44(10), 951-960. doi:10.1080/03235400903458829 es_ES
dc.description.references Slippers, B., & Wingfield, M. J. (2007). Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biology Reviews, 21(2-3), 90-106. doi:10.1016/j.fbr.2007.06.002 es_ES
dc.description.references VARSHNEY, R., GRANER, A., & SORRELLS, M. (2005). Genomics-assisted breeding for crop improvement. Trends in Plant Science, 10(12), 621-630. doi:10.1016/j.tplants.2005.10.004 es_ES
dc.description.references Winter, D. J. (2012). mmod: an R library for the calculation of population differentiation statistics. Molecular Ecology Resources, 12(6), 1158-1160. doi:10.1111/j.1755-0998.2012.03174.x es_ES


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