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FaST-LMM for two-way Epistasis tests on high performance clusters

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FaST-LMM for two-way Epistasis tests on high performance clusters

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Martínez, H.; Barrachina, S.; Castillo, M.; Quintana Ortí, ES.; Rambla De Argila, J.; Farre, X.; Navarro, A. (2018). FaST-LMM for two-way Epistasis tests on high performance clusters. Journal of Computational Biology. 25(8):862-870. https://doi.org/10.1089/cmb.2018.0087

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Title: FaST-LMM for two-way Epistasis tests on high performance clusters
Author: Martínez, Héctor Barrachina, Sergio Castillo, Maribel Quintana Ortí, Enrique Salvador Rambla de Argila, Jordi Farre, Xavier Navarro, Arcadi
UPV Unit: Universitat Politècnica de València. Departamento de Informática de Sistemas y Computadores - Departament d'Informàtica de Sistemes i Computadors
Issued date:
Abstract:
[EN] We introduce a version of the epistasis test in FaST-LMM for clusters of multithreaded processors. This new software maintains the sensitivity of the original FaST-LMM while delivering acceleration that is close to ...[+]
Subjects: Clusters of computers , Epistasis , FaST-LMM , Genome-wide association studies (GWAS) , GPUs , Multicore processors
Copyrigths: Reserva de todos los derechos
Source:
Journal of Computational Biology. (issn: 1066-5277 )
DOI: 10.1089/cmb.2018.0087
Publisher:
Mary Ann Liebert
Publisher version: https://doi.org/10.1089/cmb.2018.0087
Project ID:
MINECO/TIN2014-53495-R
MINECO/TIN2017-82972-R
WT/076113
Thanks:
The researchers from the Universitat Jaume I were supported by projects TIN2014-53495-R and TIN2017-82972-R of the MINECO and FEDER.
Type: Artículo

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