- -

Transcriptional analysis of intramuscular fatty acid composition in the longissimus thoracis muscle of Iberian × Landrace back-crossed pigs

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Transcriptional analysis of intramuscular fatty acid composition in the longissimus thoracis muscle of Iberian × Landrace back-crossed pigs

Mostrar el registro completo del ítem

Pena, R.; Noguera, J.; Casellas, J.; Diaz, I.; Díaz Fernández, AI.; Folch, J.; Ibañez Escriche, N. (2013). Transcriptional analysis of intramuscular fatty acid composition in the longissimus thoracis muscle of Iberian × Landrace back-crossed pigs. Animal Genetics. 44(6):648-660. https://doi.org/10.1111/age.12066

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/151310

Ficheros en el ítem

[Cerrado]
Nombre: Pena;Noguera;Casellas ...
Tamaño: 425.7Kb
Formato: PDF
Descripción: Versión editorial
Solicitar una copia al autor

Metadatos del ítem

Título: Transcriptional analysis of intramuscular fatty acid composition in the longissimus thoracis muscle of Iberian × Landrace back-crossed pigs
Autor: Pena, R. Noguera, J.L. Casellas, J. Diaz, I. Díaz Fernández, Ana Isabel Folch, J.M. Ibañez Escriche, Noelia
Entidad UPV: Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal
Fecha difusión:
Resumen:
[EN] This study aimed at identifying differential gene expression conditional on the fatty acid profile of the longissimus thoracis (Lt) muscle, a prime cut of economic relevance for fresh and cured pork production. A ...[+]
Palabras clave: Fatty acid profile , Gene expression , Microarray , Muscle , Porcine
Derechos de uso: Cerrado
Fuente:
Animal Genetics. (issn: 0268-9146 )
DOI: 10.1111/age.12066
Editorial:
Blackwell Publishing
Versión del editor: https://doi.org/10.1111/age.12066
Código del Proyecto:
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-03/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-02/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
info:eu-repo/grantAgreement/MICINN//AGL2008-04818-C03-01/ES/GENES CANDIDATOS E IDENTIFICACION GENOMICA DE LOCI Y RUTAS GENETICAS QUE AFECTAN A LA CALIDAD DE LA CARNE EN CERDOS/
Agradecimientos:
This work was funded by MICINN project AGL2008-04818-C03/GAN. The authors gratefully acknowledge NOVA GENETICA S.A. and the cooperative COPAGA for their collaboration and would particularly like to thank Eva Ramells, Pere ...[+]
Tipo: Artículo

References

Bakkar, N., Wang, J., Ladner, K. J., Wang, H., Dahlman, J. M., Carathers, M., … Guttridge, D. C. (2008). IKK/NF-κB regulates skeletal myogenesis via a signaling switch to inhibit differentiation and promote mitochondrial biogenesis. Journal of Cell Biology, 180(4), 787-802. doi:10.1083/jcb.200707179

Benjamini, Y., & Hochberg, Y. (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society: Series B (Methodological), 57(1), 289-300. doi:10.1111/j.2517-6161.1995.tb02031.x

Bernard, C., Cassar-Malek, I., Le Cunff, M., Dubroeucq, H., Renand, G., & Hocquette, J.-F. (2007). New Indicators of Beef Sensory Quality Revealed by Expression of Specific Genes. Journal of Agricultural and Food Chemistry, 55(13), 5229-5237. doi:10.1021/jf063372l [+]
Bakkar, N., Wang, J., Ladner, K. J., Wang, H., Dahlman, J. M., Carathers, M., … Guttridge, D. C. (2008). IKK/NF-κB regulates skeletal myogenesis via a signaling switch to inhibit differentiation and promote mitochondrial biogenesis. Journal of Cell Biology, 180(4), 787-802. doi:10.1083/jcb.200707179

Benjamini, Y., & Hochberg, Y. (1995). Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society: Series B (Methodological), 57(1), 289-300. doi:10.1111/j.2517-6161.1995.tb02031.x

Bernard, C., Cassar-Malek, I., Le Cunff, M., Dubroeucq, H., Renand, G., & Hocquette, J.-F. (2007). New Indicators of Beef Sensory Quality Revealed by Expression of Specific Genes. Journal of Agricultural and Food Chemistry, 55(13), 5229-5237. doi:10.1021/jf063372l

Bosch, L., Tor, M., Reixach, J., & Estany, J. (2009). Estimating intramuscular fat content and fatty acid composition in live and post-mortem samples in pigs. Meat Science, 82(4), 432-437. doi:10.1016/j.meatsci.2009.02.013

Brooke, M. H., & Kaiser, K. K. (1970). Muscle Fiber Types: How Many and What Kind? Archives of Neurology, 23(4), 369-379. doi:10.1001/archneur.1970.00480280083010

C�novas, A., Quintanilla, R., Amills, M., & Pena, R. N. (2010). Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits. BMC Genomics, 11(1), 372. doi:10.1186/1471-2164-11-372

Choi, Y., Park, Y., Storkson, J. M., Pariza, M. W., & Ntambi, J. M. (2002). Inhibition of stearoyl-CoA desaturase activity by the cis-9,trans-11 isomer and the trans-10,cis-12 isomer of conjugated linoleic acid in MDA-MB-231 and MCF-7 human breast cancer cells. Biochemical and Biophysical Research Communications, 294(4), 785-790. doi:10.1016/s0006-291x(02)00554-5

Chomczynski, P., & Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry, 162(1), 156-159. doi:10.1016/0003-2697(87)90021-2

Dyck, D. J., Heigenhauser, G. J. F., & Bruce, C. R. (2006). The role of adipokines as regulators of skeletal muscle fatty acid metabolism and insulin sensitivity. Acta Physiologica, 186(1), 5-16. doi:10.1111/j.1748-1716.2005.01502.x

Eden, E., Navon, R., Steinfeld, I., Lipson, D., & Yakhini, Z. (2009). GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics, 10(1). doi:10.1186/1471-2105-10-48

Erkens, T., Vandesompele, J., Van Zeveren, A., & Peelman, L. J. (2009). Correlation between porcinePPARGC1A mRNA expression and its downstream target genes in backfat andlongissimus dorsi muscle. Journal of Applied Genetics, 50(4), 361-369. doi:10.1007/bf03195694

Estellé, J., Pérez-Enciso, M., Mercadé, A., Varona, L., Alves, E., Sánchez, A., & Folch, J. M. (2006). Characterization of the porcine FABP5 gene and its association with the FAT1 QTL in an Iberian by Landrace cross. Animal Genetics, 37(6), 589-591. doi:10.1111/j.1365-2052.2006.01535.x

Falcon, B. L., Barr, S., Gokhale, P. C., Chou, J., Fogarty, J., Depeille, P., … McDonald, D. M. (2011). Reduced VEGF Production, Angiogenesis, and Vascular Regrowth Contribute to the Antitumor Properties of Dual mTORC1/mTORC2 Inhibitors. Cancer Research, 71(5), 1573-1583. doi:10.1158/0008-5472.can-10-3126

Fortin, A., Robertson, W. M., & Tong, A. K. W. (2005). The eating quality of Canadian pork and its relationship with intramuscular fat. Meat Science, 69(2), 297-305. doi:10.1016/j.meatsci.2004.07.011

Shi-Zheng, G., & Su-Mei, Z. (2009). Physiology, Affecting Factors and Strategies for Control of Pig Meat Intramuscular Fat. Recent Patents on Food, Nutrition & Agriculturee, 1(1), 59-74. doi:10.2174/2212798410901010059

Gardan, D., Gondret, F., & Louveau, I. (2006). Lipid metabolism and secretory function of porcine intramuscular adipocytes compared with subcutaneous and perirenal adipocytes. American Journal of Physiology-Endocrinology and Metabolism, 291(2), E372-E380. doi:10.1152/ajpendo.00482.2005

Gardan, D., Gondret, F., Van den Maagdenberg, K., Buys, N., De Smet, S., & Louveau, I. (2008). Lipid metabolism and cellular features of skeletal muscle and subcutaneous adipose tissue in pigs differing in IGF-II genotype. Domestic Animal Endocrinology, 34(1), 45-53. doi:10.1016/j.domaniend.2006.10.001

Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., … Zhang, J. (2004). Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80

Gondret, F., Guitton, N., Guillerm-Regost, C., & Louveau, I. (2008). Regional differences in porcine adipocytes isolated from skeletal muscle and adipose tissues as identified by a proteomic approach. Journal of Animal Science, 86(9), 2115-2125. doi:10.2527/jas.2007-0750

Guillou, H., Zadravec, D., Martin, P. G. P., & Jacobsson, A. (2010). The key roles of elongases and desaturases in mammalian fatty acid metabolism: Insights from transgenic mice. Progress in Lipid Research, 49(2), 186-199. doi:10.1016/j.plipres.2009.12.002

Herzig, S., Long, F., Jhala, U. S., Hedrick, S., Quinn, R., Bauer, A., … Montminy, M. (2001). CREB regulates hepatic gluconeogenesis through the coactivator PGC-1. Nature, 413(6852), 179-183. doi:10.1038/35093131

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2008). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols, 4(1), 44-57. doi:10.1038/nprot.2008.211

Hudson, N. J., Reverter, A., Wang, Y., Greenwood, P. L., & Dalrymple, B. P. (2009). Inferring the Transcriptional Landscape of Bovine Skeletal Muscle by Integrating Co-Expression Networks. PLoS ONE, 4(10), e7249. doi:10.1371/journal.pone.0007249

Kang, L., Ayala, J. E., Lee-Young, R. S., Zhang, Z., James, F. D., Neufer, P. D., … Wasserman, D. H. (2011). Diet-Induced Muscle Insulin Resistance Is Associated With Extracellular Matrix Remodeling and Interaction With Integrin  2 1 in Mice. Diabetes, 60(2), 416-426. doi:10.2337/db10-1116

Karlsson, M., Reue, K., Xia, Y.-R., Lusis, A. J., Langin, D., Tornqvist, H., & Holm, C. (2001). Exon–intron organization and chromosomal localization of the mouse monoglyceride lipase gene. Gene, 272(1-2), 11-18. doi:10.1016/s0378-1119(01)00559-5

Khatri, P., Sellamuthu, S., Malhotra, P., Amin, K., Done, A., & Draghici, S. (2005). Recent additions and improvements to the Onto-Tools. Nucleic Acids Research, 33(Web Server), W762-W765. doi:10.1093/nar/gki472

Kim, H.-J., Miyazaki, M., & Ntambi, J. M. (2002). Dietary cholesterol opposes PUFA-mediated repression of the stearoyl-CoA desaturase-1 gene by SREBP-1 independent mechanism. Journal of Lipid Research, 43(10), 1750-1757. doi:10.1194/jlr.m100433-jlr200

Kim, J. M., Lim, K. S., Lee, E. A., Lee, K. T., Kim, T. H., Ryu, Y. C., & Hong, K. C. (2011). Polymorphisms of the 5′ regulatory region of the porcine PPARGC1A gene and the effects on muscle fiber characteristics and meat quality. Molecular Biology Reports, 39(4), 3933-3942. doi:10.1007/s11033-011-1172-9

Kragstrup, T. W., Kjaer, M., & Mackey, A. L. (2011). Structural, biochemical, cellular, and functional changes in skeletal muscle extracellular matrix with aging. Scandinavian Journal of Medicine & Science in Sports, 21(6), 749-757. doi:10.1111/j.1600-0838.2011.01377.x

Law, B., Fowlkes, V., Goldsmith, J. G., Carver, W., & Goldsmith, E. C. (2012). Diabetes-Induced Alterations in the Extracellular Matrix and Their Impact on Myocardial Function. Microscopy and Microanalysis, 18(1), 22-34. doi:10.1017/s1431927611012256

Liang, H., Balas, B., Tantiwong, P., Dube, J., Goodpaster, B. H., O’Doherty, R. M., … Ward, W. F. (2009). Whole body overexpression of PGC-1α has opposite effects on hepatic and muscle insulin sensitivity. American Journal of Physiology-Endocrinology and Metabolism, 296(4), E945-E954. doi:10.1152/ajpendo.90292.2008

Liu, J., Damon, M., Guitton, N., Guisle, I., Ecolan, P., Vincent, A., … Gondret, F. (2009). Differentially-Expressed Genes in PigLongissimusMuscles with Contrasting Levels of Fat, as Identified by Combined Transcriptomic, Reverse Transcription PCR, and Proteomic Analyses. Journal of Agricultural and Food Chemistry, 57(9), 3808-3817. doi:10.1021/jf8033144

Mach, N., Devant, M., Díaz, I., Font-Furnols, M., Oliver, M. A., García, J. A., & Bach, A. (2006). Increasing the amount of n-3 fatty acid in meat from young Holstein bulls through nutrition1. Journal of Animal Science, 84(11), 3039-3048. doi:10.2527/jas.2005-632

Maekawa, T., Jin, W., & Ishii, S. (2009). The Role of ATF-2 Family Transcription Factors in Adipocyte Differentiation: Antiobesity Effects of p38 Inhibitors. Molecular and Cellular Biology, 30(3), 613-625. doi:10.1128/mcb.00685-09

Mercadé, A., Estellé, J., Noguera, J. L., Folch, J. M., Varona, L., Silió, L., … Pérez-Enciso, M. (2005). On growth, fatness, and form: A further look at porcine Chromosome 4 in an Iberian × Landrace cross. Mammalian Genome, 16(5), 374-382. doi:10.1007/s00335-004-2447-4

Moon, Y.-A., Shah, N. A., Mohapatra, S., Warrington, J. A., & Horton, J. D. (2001). Identification of a Mammalian Long Chain Fatty Acyl Elongase Regulated by Sterol Regulatory Element-binding Proteins. Journal of Biological Chemistry, 276(48), 45358-45366. doi:10.1074/jbc.m108413200

Morey, J. S., Ryan, J. C., & Van Dolah, F. M. (2006). Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biological Procedures Online, 8(1), 175-193. doi:10.1251/bpo126

Muriel, E., Ruiz, J., Ventanas, J., Jesús Petrón, M., & Antequera, T. (2004). Meat quality characteristics in different lines of Iberian pigs. Meat Science, 67(2), 299-307. doi:10.1016/j.meatsci.2003.11.002

Ntambi, J. M., Choi, Y., Park, Y., Peters, J. M., & Pariza, M. W. (2002). Effects of Conjugated Linoleic Acid (CLA) on Immune Responses, Body Composition and Stearoyl-CoA Desaturase. Canadian Journal of Applied Physiology, 27(6), 617-627. doi:10.1139/h02-036

Puigserver, P., & Spiegelman, B. M. (2003). Peroxisome Proliferator-Activated Receptor-γ Coactivator 1α (PGC-1α): Transcriptional Coactivator and Metabolic Regulator. Endocrine Reviews, 24(1), 78-90. doi:10.1210/er.2002-0012

Quintanilla, R., Pena, R. N., Gallardo, D., Cánovas, A., Ramírez, O., Díaz, I., … Amills, M. (2011). Porcine intramuscular fat content and composition are regulated by quantitative trait loci with muscle-specific effects1. Journal of Animal Science, 89(10), 2963-2971. doi:10.2527/jas.2011-3974

Quiroz-Rothe, E., & Rivero, J.-L. L. (2004). Coordinated expression of myosin heavy chains, metabolic enzymes, and morphological features of porcine skeletal muscle fiber types. Microscopy Research and Technique, 65(1-2), 43-61. doi:10.1002/jemt.20090

Ramayo-Caldas, Y., Mercadé, A., Castelló, A., Yang, B., Rodríguez, C., Alves, E., … Folch, J. M. (2012). Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross1. Journal of Animal Science, 90(9), 2883-2893. doi:10.2527/jas.2011-4900

Rothschild, M. F., Hu, Z., & Jiang, Z. (2007). Advances in QTL Mapping in Pigs. International Journal of Biological Sciences, 192-197. doi:10.7150/ijbs.3.192

Scarpulla, R. C. (2012). Nucleus-encoded regulators of mitochondrial function: Integration of respiratory chain expression, nutrient sensing and metabolic stress. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1819(9-10), 1088-1097. doi:10.1016/j.bbagrm.2011.10.011

Seal, R. L., Gordon, S. M., Lush, M. J., Wright, M. W., & Bruford, E. A. (2010). genenames.org: the HGNC resources in 2011. Nucleic Acids Research, 39(Database), D514-D519. doi:10.1093/nar/gkq892

Silveira, L. R., Fiamoncini, J., Hirabara, S. M., Procópio, J., Cambiaghi, T. D., Pinheiro, C. H. J., … Curi, R. (2008). Updating the effects of fatty acids on skeletal muscle. Journal of Cellular Physiology, 217(1), 1-12. doi:10.1002/jcp.21514

Supek, F., Bošnjak, M., Škunca, N., & Šmuc, T. (2011). REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms. PLoS ONE, 6(7), e21800. doi:10.1371/journal.pone.0021800

Suzuki, K., Ishida, M., Kadowaki, H., Shibata, T., Uchida, H., & Nishida, A. (2006). Genetic correlations among fatty acid compositions in different sites of fat tissues, meat production, and meat quality traits in Duroc pigs. Journal of Animal Science, 84(8), 2026-2034. doi:10.2527/jas.2005-660

Vidal, O., Noguera, J. L., Amills, M., Varona, L., Gil, M., Jiménez, N., … Sánchez, A. (2005). Identification of carcass and meat quality quantitative trait loci in a Landrace pig population selected for growth and leanness1. Journal of Animal Science, 83(2), 293-300. doi:10.2527/2005.832293x

Wang, N., Tytell, J. D., & Ingber, D. E. (2009). Mechanotransduction at a distance: mechanically coupling the extracellular matrix with the nucleus. Nature Reviews Molecular Cell Biology, 10(1), 75-82. doi:10.1038/nrm2594

Wilson, C. L., & Miller, C. J. (2005). Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. Bioinformatics, 21(18), 3683-3685. doi:10.1093/bioinformatics/bti605

Wood, J. ., Richardson, R. ., Nute, G. ., Fisher, A. ., Campo, M. ., Kasapidou, E., … Enser, M. (2004). Effects of fatty acids on meat quality: a review. Meat Science, 66(1), 21-32. doi:10.1016/s0309-1740(03)00022-6

Wood, J. D., Enser, M., Fisher, A. V., Nute, G. R., Sheard, P. R., Richardson, R. I., … Whittington, F. M. (2008). Fat deposition, fatty acid composition and meat quality: A review. Meat Science, 78(4), 343-358. doi:10.1016/j.meatsci.2007.07.019

Wu, Z., Irizarry, R. A., Gentleman, R., Martinez-Murillo, F., & Spencer, F. (2004). A Model-Based Background Adjustment for Oligonucleotide Expression Arrays. Journal of the American Statistical Association, 99(468), 909-917. doi:10.1198/016214504000000683

Xu, X., Zhao, Y., & Simon, R. (2007). Gene Set Expression Comparison kit for BRB-ArrayTools. Bioinformatics, 24(1), 137-139. doi:10.1093/bioinformatics/btm541

Yuan, J. S., Reed, A., Chen, F., & Stewart, C. N. (2006). Statistical analysis of real-time PCR data. BMC Bioinformatics, 7(1). doi:10.1186/1471-2105-7-85

Zhang, B., Kirov, S., & Snoddy, J. (2005). WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Research, 33(Web Server), W741-W748. doi:10.1093/nar/gki475

Zhang, S., Knight, T. J., Stalder, K. J., Goodwin, R. N., Lonergan, S. M., & Beitz, D. C. (2009). Effects of breed, sex and halothane genotype on fatty acid composition of triacylglycerols and phospholipids in pork longissimus muscle. Journal of Animal Breeding and Genetics, 126(4), 259-268. doi:10.1111/j.1439-0388.2008.00782.x

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem