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Thermodynamic framework for information in nanoscale systems with memory

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Thermodynamic framework for information in nanoscale systems with memory

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dc.contributor.author Arias-Gonzalez, J. R. es_ES
dc.date.accessioned 2020-10-24T03:30:47Z
dc.date.available 2020-10-24T03:30:47Z
dc.date.issued 2017-11-28 es_ES
dc.identifier.issn 0021-9606 es_ES
dc.identifier.uri http://hdl.handle.net/10251/153115
dc.description This article may be downloaded for personal use only. Any other use requires prior permission of the author and AIP Publishing. This article appeared in Arias-Gonzalez, J. Ricardo. 2017. Thermodynamic Framework for Information in Nanoscale Systems with Memory. The Journal of Chemical Physics 147 (20). AIP Publishing: 205101. doi:10.1063/1.5004793 and may be found at https://doi.org/10.1063/1.5004793." es_ES
dc.description.abstract [EN] Information is represented by linear strings of symbols with memory that carry errors as a result of their stochastic nature. Proofreading and edition are assumed to improve certainty although such processes may not be effective. Here, we develop a thermodynamic theory for material chains made up of nanoscopic subunits with symbolic meaning in the presence of memory. This framework is based on the characterization of single sequences of symbols constructed under a protocol and is used to derive the behavior of ensembles of sequences similarly constructed. We then analyze the role of proofreading and edition in the presence of memory finding conditions to make revision an effective process, namely, to decrease the entropy of the chain. Finally, we apply our formalism to DNA replication and RNA transcription finding that Watson and Crick hybridization energies with which nucleotides are branched to the template strand during the copying process are optimal to regulate the fidelity in proofreading. These results are important in applications of information theory to a variety of solid-state physical systems and other biomolecular processes. Published by AIP Publishing. es_ES
dc.description.sponsorship This work was supported by the Spanish Ministry of Economy and Competitiveness (Grant No. MAT2015-71806-R). es_ES
dc.language Inglés es_ES
dc.publisher American Institute of Physics es_ES
dc.relation.ispartof The Journal of Chemical Physics es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Nanoscale es_ES
dc.subject Information Theory es_ES
dc.subject Thermodynamics es_ES
dc.subject DNA replication es_ES
dc.subject DNA transcription es_ES
dc.subject Memory es_ES
dc.subject.classification FISICA APLICADA es_ES
dc.title Thermodynamic framework for information in nanoscale systems with memory es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1063/1.5004793 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//MAT2015-71806-R/ES/INFLUENCIA DEL CALOR EMITIDO POR NANOPARTICULAS MAGNETICAS SOBRE BIOMOLECULAS DETERMINADO MEDIANTE PINZAS OPTICAS/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Física Aplicada - Departament de Física Aplicada es_ES
dc.description.bibliographicCitation Arias-Gonzalez, JR. (2017). Thermodynamic framework for information in nanoscale systems with memory. The Journal of Chemical Physics. 147(20):1-10. https://doi.org/10.1063/1.5004793 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1063/1.5004793 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 10 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 147 es_ES
dc.description.issue 20 es_ES
dc.identifier.pmid 29195281 es_ES
dc.relation.pasarela S\407991 es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
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