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Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis

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Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis

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dc.contributor.author Gonzalo, M.J. es_ES
dc.contributor.author Díaz Bermúdez, Aurora es_ES
dc.contributor.author Dhillon, Narinder P. S. es_ES
dc.contributor.author Reddy, Umesh K. es_ES
dc.contributor.author Picó Sirvent, María Belén es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.date.accessioned 2020-11-10T04:33:08Z
dc.date.available 2020-11-10T04:33:08Z
dc.date.issued 2019-06-03 es_ES
dc.identifier.issn 1471-2164 es_ES
dc.identifier.uri http://hdl.handle.net/10251/154506
dc.description.abstract [EN] BackgroundThe importance of Indian germplasm as origin and primary center of diversity of cultivated melon is widely accepted. Genetic diversity of several collections from Indian has been studied previously, although an integrated analysis of these collections in a global diversity perspective has not been possible. In this study, a sample of Indian collections together with a selection of world-wide cultivars to analyze the genetic diversity structure based on Genotype by Sequence data.ResultsA set of 6158 informative Single Nucleotide Polymorphism (SNP) in 175 melon accessions was generated. Melon germplasm could be classified into six major groups, in concordance with horticultural groups. Indian group was in the center of the diversity plot, with the highest genetic diversity. No strict genetic differentiation between wild and cultivated accessions was appreciated in this group. Genomic regions likely involved in the process of diversification were also found. Interestingly, some SNPs differentiating inodorus and cantalupensis groups are linked to Quantitiative Trait Loci involved in ripening behavior (a major characteristic that differentiate those groups). Linkage disequilibrium was found to be low (17kb), with more rapid decay in euchromatic (8kb) than heterochromatic (30kb) regions, demonstrating that recombination events do occur within heterochromatn, although at lower frequency than in euchromatin. Concomitantly, haplotype blocks were relatively small (59kb). Some of those haplotype blocks were found fixed in different melon groups, being therefore candidate regions that are involved in the diversification of melon cultivars.ConclusionsThe results support the hypothesis that India is the primary center of diversity of melon, Occidental and Far-East cultivars have been developed by divergent selection. Indian germplasm is genetically distinct from African germplasm, supporting independent domestication events. The current set of traditional Indian accessions may be considered as a population rather than a standard collection of fixed landraces with high intercrossing between cultivated and wild melons. es_ES
dc.description.sponsorship This work was supported by the Spanish Ministry of Economy and Competitiveness (MINECO)-FEDER grant AGL2015-64625-C2-R to AJM (project conception, experiments, data acquisition and analysis, manuscript writing, publication costs), AGL2017-85563-C2-1-R and the PROMETEO/2017/078 grant funded by Generalitat Valenciana (Conselleria d'Educacio, Investigacio, Cultura i Esport) to BP (project conception, provide samples and manuscript drafting). AD was supported by a Jae-Doc contract from CSIC (experiments and manuscript drafting). es_ES
dc.language Inglés es_ES
dc.publisher Springer (Biomed Central Ltd.) es_ES
dc.relation.ispartof BMC Genomics es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Cucumis melo es_ES
dc.subject SNP es_ES
dc.subject Haplotype es_ES
dc.subject Genetic structure es_ES
dc.subject Diversity es_ES
dc.subject Linkage disequilibrium es_ES
dc.subject.classification GENETICA es_ES
dc.title Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1186/s12864-019-5784-0 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//AGL2015-64625-C2-2-R/ES/EVOLUCION Y DIVERSIFICACION EN CUCUMIS. GENETICA DE LA DOMESTICACION, MORFOLOGIA DE FRUTO Y BARRERAS REPRODUCTIVAS/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/GVA//PROMETEO%2F2017%2F078/ES/Selección de variedades tradicionales y desarrollo de nuevas variedades de cucurbitáceas adaptadas a la producción ecológica/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/AGL2017-85563-C2-1-R/ES/CONTROL MULTIDISCIPLINAR DE ENFERMEDADES FUNGICAS Y VIROSIS EN MELON Y SANDIA: UN NUEVO RETO/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Gonzalo, M.; Díaz Bermúdez, A.; Dhillon, NPS.; Reddy, UK.; Picó Sirvent, MB.; Monforte Gilabert, AJ. (2019). Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis. BMC Genomics. 20:1-13. https://doi.org/10.1186/s12864-019-5784-0 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1186/s12864-019-5784-0 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 13 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 20 es_ES
dc.identifier.pmid 31159730 es_ES
dc.identifier.pmcid PMC6547464 es_ES
dc.relation.pasarela S\406591 es_ES
dc.contributor.funder Generalitat Valenciana es_ES
dc.contributor.funder Agencia Estatal de Investigación es_ES
dc.contributor.funder European Regional Development Fund es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
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