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De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages

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De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages

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dc.contributor.author Rozenfeld, Christoffer es_ES
dc.contributor.author Blanca Postigo, José Miguel es_ES
dc.contributor.author Gallego Albiach, Victor es_ES
dc.contributor.author García-Carpintero, Víctor es_ES
dc.contributor.author Herranz-Jusdado, Juan Germán es_ES
dc.contributor.author Pérez Igualada, Luz María es_ES
dc.contributor.author Asturiano, Juan F. es_ES
dc.contributor.author Cañizares Sales, Joaquín es_ES
dc.contributor.author Peñaranda, D.S. es_ES
dc.date.accessioned 2021-01-28T04:31:51Z
dc.date.available 2021-01-28T04:31:51Z
dc.date.issued 2019-06-12 es_ES
dc.identifier.issn 1932-6203 es_ES
dc.identifier.uri http://hdl.handle.net/10251/160081
dc.description.abstract [EN] Paralogues pairs are more frequently observed in eels (Anguilla sp.) than in other teleosts. The paralogues often show low phylogenetic distances; however, they have been assigned to the third round of whole genome duplication (WGD), shared by all teleosts (3R), due to their conserved synteny. The apparent contradiction of low phylogenetic difference and 3R conserved synteny led us to study the duplicated gene complement of the freshwater eels. With this aim, we assembled de novo transcriptomes of two highly relevant freshwater eel species: The European (Anguilla anguilla) and the Japanese eel (Anguilla japonica). The duplicated gene complement was analysed in these transcriptomes, and in the genomes and transcriptomes of other Actinopterygii species. The study included an assessment of neutral genetic divergence (4dTv), synteny, and the phylogenetic origins and relationships of the duplicated gene complements. The analyses indicated a high accumulation of duplications (1217 paralogue pairs) among freshwater eel genes, which may have originated in a WGD event after the Elopomorpha lineage diverged from the remaining teleosts, and thus not at the 3R. However, very similar results were observed in the basal Osteoglossomorpha and Clupeocephala branches, indicating that the specific genomic regions of these paralogues may still have been under tetrasomic inheritance at the split of the teleost lineages. Therefore, two potential hypotheses may explain the results: i) The freshwater eel lineage experienced an additional WGD to 3R, and ii) Some duplicated genomic regions experienced lineage specific rediploidization after 3R in the ancestor to freshwater eels. The supporting/opposing evidence for both hypotheses is discussed. es_ES
dc.description.sponsorship This study received funding from the project REPRO-TEMP (AGL2013-41646-R) funded by the Spanish Ministry of Economy and Competitiveness, and from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 642893 (IMPRESS), which also included the predoctoral contracts of CR and JGHJ. VG has a postdoctoral grant from the Spanish Ministry of Science, Innovation and Universities (MICIU; Programa Juan de la Cierva-Incorporacion; IJCI-2017-34200). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. es_ES
dc.language Inglés es_ES
dc.publisher Public Library of Science es_ES
dc.relation.ispartof PLoS ONE es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject.classification PRODUCCION ANIMAL es_ES
dc.subject.classification GENETICA es_ES
dc.title De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1371/journal.pone.0218085 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/642893/EU/Improved production strategies for endangered freshwater species./ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//AGL2013-41646-R/ES/LA ANGUILA EUROPEA COMO MODELO PARA ESTUDIAR LA TEMPERATURA COMO MODULADOR DE LA MADURACION SEXUAL EN TELEOSTEOS. POTENCIAL APLICACION EN ACUICULTURA./ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/AEI//IJCI-2017-34200/ES/AYUDAS JUAN DE LA CIERVA INCORPORACION/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto de Ciencia y Tecnología Animal - Institut de Ciència i Tecnologia Animal es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal es_ES
dc.description.bibliographicCitation Rozenfeld, C.; Blanca Postigo, JM.; Gallego Albiach, V.; García-Carpintero, V.; Herranz-Jusdado, JG.; Pérez Igualada, LM.; Asturiano, JF.... (2019). De novo European eel transcriptome provides insights into the evolutionary history of duplicated genes in teleost lineages. PLoS ONE. 14(6):1-25. https://doi.org/10.1371/journal.pone.0218085 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1371/journal.pone.0218085 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 25 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 14 es_ES
dc.description.issue 6 es_ES
dc.identifier.pmid 31188893 es_ES
dc.identifier.pmcid PMC6561569 es_ES
dc.relation.pasarela S\388444 es_ES
dc.contributor.funder Ministerio de Economía y Empresa es_ES
dc.contributor.funder European Commission es_ES
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