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Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches

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Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches

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dc.contributor.author Aguado, Encarnación es_ES
dc.contributor.author García, Alicia es_ES
dc.contributor.author Iglesias-Moya, Jessica es_ES
dc.contributor.author Romero, Jonathan es_ES
dc.contributor.author Wehner, Todd C. es_ES
dc.contributor.author Gómez-Guillamón, Maria Luisa es_ES
dc.contributor.author Picó Sirvent, María Belén es_ES
dc.contributor.author Garcés-Claver, Ana es_ES
dc.contributor.author Martínez, Cecilia es_ES
dc.contributor.author Jamilena, Manuel es_ES
dc.date.accessioned 2021-06-15T03:31:10Z
dc.date.available 2021-06-15T03:31:10Z
dc.date.issued 2020-08-19 es_ES
dc.identifier.uri http://hdl.handle.net/10251/167974
dc.description.abstract [EN] The sexual expression of watermelon plants is the result of the distribution and occurrence of male, female, bisexual and hermaphrodite flowers on the main and secondary stems. Plants can be monoecious (producing male and female flowers), andromonoecious (producing male and hermaphrodite flowers), or partially andromonoecious (producing male, female, bisexual, and hermaphrodite flowers) within the same plant. Sex determination of individual floral buds and the distribution of the different flower types on the plant, are both controlled by ethylene. A single missense mutation in the ethylene biosynthesis geneCitACS4, is able to promote the conversion of female into hermaphrodite flowers, and therefore of monoecy (genotypeMM) into partial andromonoecy (genotypeMm) or andromonoecy (genotypemm). We phenotyped and genotyped, for theM/mlocus, a panel of 207 C. lanatusaccessions, including five inbreds and hybrids, and found several accessions that were repeatedly phenotyped as PA (partially andromonoecious) in several locations and different years, despite beingMM. A cosegregation analysis between a SNV inCitACS4and the PA phenotype, demonstrated that the occurrence of bisexual and hermaphrodite flowers in a PA line is not dependent onCitACS4, but conferred by an unlinked recessive gene which we calledpa. Two different approaches were performed to map thepagene in the genome ofC. lanatus: bulk segregant analysis sequencing (BSA-seq) and genome wide association analysis studies (GWAS). The BSA-seq study was performed using two contrasting bulks, the monoecious M-bulk and the partially andromonoecious PA-bulk, each one generated by pooling DNA from 20 F2 plants. For GWAS, 122 accessions from USDA gene bank, already re-sequenced by genotyping by sequencing (GBS), were used. The combination of the two approaches indicates thatpamaps onto a genomic region expanding across 32.24-36.44 Mb in chromosome 1 of watermelon. Fine mapping narrowed down thepalocus to a 867 Kb genomic region containing 101 genes. A number of candidate genes were selected, not only for their function in ethylene biosynthesis and signalling as well as their role in flower development and sex determination, but also by the impact of the SNPs and indels differentially detected in the two sequenced bulks. es_ES
dc.description.sponsorship This work has been funded by grant UAL18-BIO-B017-B, awarded by the call "Proyectos UAL-FEDER " within the framework of the 2014-2020 FEDER-Andalusia Operational Program, as well as by the research group BIO293 of the University of Almeria. es_ES
dc.language Inglés es_ES
dc.publisher Frontiers Media SA es_ES
dc.relation.ispartof Frontiers in Plant Science es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Monoecy es_ES
dc.subject Partial andromonoecy es_ES
dc.subject Andromonoecy es_ES
dc.subject Genome-wide association analysis es_ES
dc.subject Bulk segregant analysis sequencing es_ES
dc.subject.classification GENETICA es_ES
dc.title Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.3389/fpls.2020.01243 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/UAL//UAL18-BIO-B017-B/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.description.bibliographicCitation Aguado, E.; García, A.; Iglesias-Moya, J.; Romero, J.; Wehner, TC.; Gómez-Guillamón, ML.; Picó Sirvent, MB.... (2020). Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches. Frontiers in Plant Science. 11:1-16. https://doi.org/10.3389/fpls.2020.01243 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.3389/fpls.2020.01243 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 16 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 11 es_ES
dc.identifier.eissn 1664-462X es_ES
dc.identifier.pmid 32973825 es_ES
dc.identifier.pmcid PMC7466658 es_ES
dc.relation.pasarela S\419903 es_ES
dc.contributor.funder Universidad de Almería es_ES
dc.contributor.funder European Regional Development Fund es_ES
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dc.subject.ods 02.- Poner fin al hambre, conseguir la seguridad alimentaria y una mejor nutrición, y promover la agricultura sostenible es_ES
dc.subject.ods 15.- Proteger, restaurar y promover la utilización sostenible de los ecosistemas terrestres, gestionar de manera sostenible los bosques, combatir la desertificación y detener y revertir la degradación de la tierra, y frenar la pérdida de diversidad biológica es_ES


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