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Transcriptome-informed identification and characterization of Planococcus citri cis- and trans- isoprenyl diphosphate synthase genes

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Transcriptome-informed identification and characterization of Planococcus citri cis- and trans- isoprenyl diphosphate synthase genes

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dc.contributor.author Jutersek, Mojca es_ES
dc.contributor.author Gerasymenko, Iryna M. es_ES
dc.contributor.author Petek, Marko es_ES
dc.contributor.author Haumann, Elisabeth es_ES
dc.contributor.author Vacas, Sandra es_ES
dc.contributor.author Kallam, Kalyani es_ES
dc.contributor.author Gianoglio, Silvia es_ES
dc.contributor.author Navarro-Llopis, Vicente es_ES
dc.contributor.author Heethoff, Michael es_ES
dc.contributor.author Navarro Fuertes, Ismael es_ES
dc.contributor.author Patron, Nicola es_ES
dc.contributor.author Orzáez Calatayud, Diego Vicente es_ES
dc.contributor.author Gruden, Kristina es_ES
dc.contributor.author Warcecha, Heribert es_ES
dc.contributor.author Baebler, Spela es_ES
dc.date.accessioned 2024-07-23T18:01:57Z
dc.date.available 2024-07-23T18:01:57Z
dc.date.issued 2024-04-19 es_ES
dc.identifier.uri http://hdl.handle.net/10251/206556
dc.description.abstract [EN] Insect physiology and reproduction depend on several terpenoid compounds, whose biosynthesis is mainly unknown. One enigmatic group of insect monoterpenoids are mealybug sex pheromones, presumably resulting from the irregular coupling activity of unidentified isoprenyl diphosphate synthases (IDSs). Here, we performed a comprehensive search for IDS coding sequences of the pest mealybug Planococcus citri . We queried the available genomic and newly generated short- and long -read P. citri transcriptomic data and identified 18 putative IDS genes, whose phylogenetic analysis indicates several gene family expansion events. In vitro testing confirmed regular short -chain coupling activity with five gene products. With the candidate with highest IDS activity, we also detected low amounts of irregular coupling products, and determined amino acid residues important for chain -length preference and irregular coupling activity. This work therefore provides an important foundation for deciphering terpenoid biosynthesis in mealybugs, including the sex pheromone biosynthesis in P. citri . es_ES
dc.description.sponsorship All authors gratefully acknowledge the European Research Area Cofund Action "ERACoBioTech "for the support of the project SUSPHIRE (Sustainable Production of Pheromones for Insect Pest Control in Agriculture) , which received funding from the Horizon 2020 research and innovation program under grant agreement No. 722361. M.J., M.P., K.G., and S .B. acknowledge the financial support from the Slovenian Ministry of Education, Science and Sport, as well Slovenian Research Agency (grant No. P4-0165) . I.M.G., E.H., and H.W. acknowledge the support by German Federal Ministry of Education and Research (BMBF) , grant number 031B060. K.K. and N.P. acknowledge the support of the UK Biotechnology and Biological Sciences Research Council (BBSRC) Core Strategic Program Grant to the Earlham Institute (Genomes to Food Security; BB/CSP1720/1) and grant BB/R021554/1. S.G. and D.O. acknowledge grant PLEC2021-008020 (PHEROPLUS) by the Spanish Ministry of Science and Innovation, the Next Generation EU initiative and the Spanish Agencia Estatal de Investigacio<acute accent> n (AEI) . S.G. acknowl- edges a postdoctoral grant (CIAPOS/2021/316) from the Generalitat Valenciana and the Fondo Social Europeo. Illumina sequencing was delivered via the BBSRC National Capability in Genomics and Single Cell Analysis (BBS/E/T/000PR9816) at the Earlham Institute by members of the Genomics Pipelines Group. I.M.G. is grateful to Prof. Dr. Richard Dehn, Laura Kleditzsch, and Miriam Peters from the University of Applied Sciences in Darmstadt for the possibility to carry out GC -MS measurements. We would also like to thank Dr Laura Ross and her group from the University of Edinburgh for kindly providing their P. citri Illumina datasets as well as Dr Rosario Gil Garcia from the University of Va- lencia for providing insights into the P. citri endosymbionts and their genomes. Graphical abstract was created with BioRender.com . es_ES
dc.language Inglés es_ES
dc.publisher Elsevier (Cell Press) es_ES
dc.relation.ispartof iScience es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Biochemistry es_ES
dc.subject Entomology es_ES
dc.subject Omics es_ES
dc.subject Phylogenetics es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.title Transcriptome-informed identification and characterization of Planococcus citri cis- and trans- isoprenyl diphosphate synthase genes es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1016/j.isci.2024.109441 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PLEC2021-008020/ES/Bioproducción Sostenible de Feromonas de Insecto para Control de Plagas/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/722361/EU/Cofund on Biotechnologies/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/BBSRC//BBS%2FE%2FT%2F000PR9816/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/BMBF//031B060/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/GVA//CIAPOS%2F2021%2F316/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/ARRS//P4-0165/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/BBSRC//BB%2FCSP1720%2F1/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.description.bibliographicCitation Jutersek, M.; Gerasymenko, IM.; Petek, M.; Haumann, E.; Vacas, S.; Kallam, K.; Gianoglio, S.... (2024). Transcriptome-informed identification and characterization of Planococcus citri cis- and trans- isoprenyl diphosphate synthase genes. iScience. 27(4). https://doi.org/10.1016/j.isci.2024.109441 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1016/j.isci.2024.109441 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 27 es_ES
dc.description.issue 4 es_ES
dc.identifier.eissn 2589-0042 es_ES
dc.relation.pasarela S\522825 es_ES
dc.contributor.funder European Commission es_ES
dc.contributor.funder Generalitat Valenciana es_ES
dc.contributor.funder Slovenian Research Agency es_ES
dc.contributor.funder Agencia Estatal de Investigación es_ES
dc.contributor.funder Biotechnological Science Research Council, Reino Unido es_ES
dc.contributor.funder Bundesministerium für Bildung und Forschung, Alemania es_ES
dc.contributor.funder Biotechnology and Biological Sciences Research Council, Reino Unido es_ES


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