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CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

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CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

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dc.contributor.author Bleda, Marta es_ES
dc.contributor.author Tarraga, Joaquín es_ES
dc.contributor.author De María, Alejandro es_ES
dc.contributor.author Salavert, Francisco es_ES
dc.contributor.author García-Alonso, Luz es_ES
dc.contributor.author Celma Giménez, Matilde es_ES
dc.contributor.author Martín Mayordomo, Ainoha es_ES
dc.contributor.author Dopazo, Joaquín es_ES
dc.contributor.author Medina, Ignacio es_ES
dc.date.accessioned 2014-03-04T15:44:33Z
dc.date.available 2014-03-04T15:44:33Z
dc.date.issued 2012-07
dc.identifier.issn 0305-1048
dc.identifier.uri http://hdl.handle.net/10251/36164
dc.description.abstract During the past years, the advances in high-throughput technologies have produced an unprecedented growth in the number and size of repositories and databases storing relevant biological data. Today, there is more biological information than ever but, unfortunately, the current status of many of these repositories is far from being optimal. Some of the most common problems are that the information is spread out in many small databases; frequently there are different standards among repositories and some databases are no longer supported or they contain too specific and unconnected information. In addition, data size is increasingly becoming an obstacle when accessing or storing biological data. All these issues make very difficult to extract and integrate information from different sources, to analyze experiments or to access and query this information in a programmatic way. CellBase provides a solution to the growing necessity of integration by easing the access to biological data. CellBase implements a set of RESTful web services that query a centralized database containing the most relevant biological data sources. The database is hosted in our servers and is regularly updated. CellBase documentation can be found at http://docs.bioinfo.cipf.es/projects/cellbase. es_ES
dc.description.sponsorship The Spanish Ministry of Science and Innovation (MICINN) [BIO2011-27069]; the Conselleria de Educacio of the Valencian Community [PROMETEO/2010/001]; National Institute of Bioinformatics (www.inab.org); CIBER de Enfermedades Raras (CIBERER), ISCIII and MICINN; Red Tematica de Investigacion Cooperativa en Cancer (RTICC) [RD06/0020/1019] ISCIII, MICINN and INNPACTO [IPT-010000-2010-43], MICINN. Funding for open access charge: MICINN [BIO2011-27069]. en_EN
dc.format.extent 6 es_ES
dc.language Inglés es_ES
dc.publisher Oxford University Press (OUP): Policy C - Option B es_ES
dc.relation.ispartof Nucleic Acids Research es_ES
dc.rights Reconocimiento - No comercial (by-nc) es_ES
dc.subject Genetic variation es_ES
dc.subject Database es_ES
dc.subject Resource es_ES
dc.subject Targets es_ES
dc.subject Catalog es_ES
dc.subject.classification LENGUAJES Y SISTEMAS INFORMATICOS es_ES
dc.title CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1093/nar/gks575
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BIO2011-27069/ES/UNDERSTANDING THE MECHANISMS OF THE DISEASE AND PRIORITIZING CANDIDATE GENES UNDER A SYSTEMS PERSPECTIVE/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/GVA//PROMETEOII%2F2010%2F001/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MSC//RD06%2F0020%2F1019/ES/RED TEMÁTICA DE INVESTIGACIÓN COOPERATIVA DEL CANCER/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//IPT-010000-2010-043/ES/CARACTERIZACIÓN DE LA VARIABILIDAD GENÉTICA, GENÓMICA Y METABÓLICA DE LOS CÍTRICOS Y SU APLICACIÓN EN LA OBTENCIÓN DE NUEVAS VARIEDADES/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació es_ES
dc.description.bibliographicCitation Bleda, M.; Tarraga, J.; De María, A.; Salavert, F.; García-Alonso, L.; Celma Giménez, M.; Martín Mayordomo, A.... (2012). CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. Nucleic Acids Research. 40(1):609-614. https://doi.org/10.1093/nar/gks575 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://nar.oxfordjournals.org/content/40/W1/W609.full es_ES
dc.description.upvformatpinicio 609 es_ES
dc.description.upvformatpfin 614 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 40 es_ES
dc.description.issue 1 es_ES
dc.relation.senia 239030
dc.identifier.pmid 22693220 en_EN
dc.identifier.pmcid PMC3394301 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Ministerio de Sanidad y Consumo es_ES
dc.contributor.funder Generalitat Valenciana es_ES
dc.contributor.funder Instituto de Salud Carlos III es_ES
dc.contributor.funder Centro de Investigación Biomédica en Red de Enfermedades Raras es_ES
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