- -

GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome

Mostrar el registro completo del ítem

Bernet, GP.; Muñoz-Pomer, A.; Domínguez-Escribá, L.; Covelli, L.; Bernad, L.; Ramasamy, S.; Futami, R.... (2011). GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. Mobile Genetic Elements. 1(2):97-102. https://doi.org/10.4161/mge.1.2.17635

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/37645

Ficheros en el ítem

[Cerrado]
Nombre: Guillermo P.;Alfo ...
Tamaño: 4.273Mb
Formato: PDF
Descripción: Versión editorial
Solicitar una copia al autor

Metadatos del ítem

Título: GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome
Autor: Bernet, Guillermo P. Muñoz-Pomer, Alfonso Domínguez-Escribá, Laura Covelli, Laura Bernad, Lucía Ramasamy, Sukanya Futami, Ricardo Sempere Luna, José María Moya, Andrés Llorens, Carlos
Entidad UPV: Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació
Fecha difusión:
Resumen:
[EN] The Gypsy Database concerning Mobile Genetic Elements (release 2.0) is a wiki-style project devoted to the phylogenetic classification of LTR retroelements and their viral and host gene relatives characterized from ...[+]
Palabras clave: Mobilome , Ty3/Gypsy , Bel/Pao , Ginger1 , Ginger2 , CIN1
Derechos de uso: Cerrado
Fuente:
Mobile Genetic Elements. (issn: 2159-2543 )
DOI: 10.4161/mge.1.2.17635
Editorial:
Landes Bioscience
Versión del editor: https://www.landesbioscience.com/journals/mge/03BernetMGE1-2.pdf
Código del Proyecto:
info:eu-repo/grantAgreement/MICINN//IDI-20100007/ES/PROYECTO GYPSY DATABASE: LA BASE DE DATOS COLABORATIVA DE ELEMENTOS GENÉTICOS MÓVILES/
info:eu-repo/grantAgreement/GVA//IMIDTA%2F2009%2F118/ES/Gypsy Database Project And Biotechvana Bioinformatics Ii/
info:eu-repo/grantAgreement/MICINN//PTQ-09-01-00020/ES/PTQ-09-01-00020/
info:eu-repo/grantAgreement/MICINN//PTQ-10-03552/ES/PTQ-10-03552/
info:eu-repo/grantAgreement/GVA//PROMETEO%2F2009%2F092/
Agradecimientos:
We thank Denys Wheatley and Angela Panther from Biomedes for copyediting of this article, which was partially supported by Grants IDI-20100007 from CDTI (Centro de Desarrollo Tecnológico Industrial), IMIDTA/2009/118 from ...[+]
Tipo: Artículo

References

Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J. M., Tamarit, D., … Moya, A. (2010). The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Research, 39(Database), D70-D74. doi:10.1093/nar/gkq1061

Altschul, S. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25(17), 3389-3402. doi:10.1093/nar/25.17.3389

(2010). Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology, 8(2), e1000313. doi:10.1371/journal.pbio.1000313 [+]
Llorens, C., Futami, R., Covelli, L., Dominguez-Escriba, L., Viu, J. M., Tamarit, D., … Moya, A. (2010). The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Research, 39(Database), D70-D74. doi:10.1093/nar/gkq1061

Altschul, S. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25(17), 3389-3402. doi:10.1093/nar/25.17.3389

(2010). Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology, 8(2), e1000313. doi:10.1371/journal.pbio.1000313

Legeai, F., Shigenobu, S., Gauthier, J.-P., Colbourne, J., Rispe, C., Collin, O., … Tagu, D. (2010). AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Molecular Biology, 19, 5-12. doi:10.1111/j.1365-2583.2009.00930.x

Marchler-Bauer, A., Lu, S., Anderson, J. B., Chitsaz, F., Derbyshire, M. K., DeWeese-Scott, C., … Bryant, S. H. (2010). CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Research, 39(Database), D225-D229. doi:10.1093/nar/gkq1189

Neuvonen, M., & Ahola, T. (2009). Differential Activities of Cellular and Viral Macro Domain Proteins in Binding of ADP-Ribose Metabolites. Journal of Molecular Biology, 385(1), 212-225. doi:10.1016/j.jmb.2008.10.045

Basta, H. A., Cleveland, S. B., Clinton, R. A., Dimitrov, A. G., & McClure, M. A. (2009). Evolution of Teleost Fish Retroviruses: Characterization of New Retroviruses with Cellular Genes. Journal of Virology, 83(19), 10152-10162. doi:10.1128/jvi.02546-08

Copeland, C. S., Mann, V. H., Morales, M. E., Kalinna, B. H., & Brindley, P. J. (2005). BMC Evolutionary Biology, 5(1), 20. doi:10.1186/1471-2148-5-20

Llorens, C., Muñoz-Pomer, A., Bernad, L., Botella, H., & Moya, A. (2009). Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Biology Direct, 4(1), 41. doi:10.1186/1745-6150-4-41

De la Chaux, N., & Wagner, A. (2011). BEL/Pao retrotransposons in metazoan genomes. BMC Evolutionary Biology, 11(1). doi:10.1186/1471-2148-11-154

Bao, W., Kapitonov, V. V., & Jurka, J. (2010). Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mobile DNA, 1(1), 3. doi:10.1186/1759-8753-1-3

Pritham, E. J., Putliwala, T., & Feschotte, C. (2007). Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses. Gene, 390(1-2), 3-17. doi:10.1016/j.gene.2006.08.008

Kapitonov, V. V., & Jurka, J. (2006). Self-synthesizing DNA transposons in eukaryotes. Proceedings of the National Academy of Sciences, 103(12), 4540-4545. doi:10.1073/pnas.0600833103

Capy, P., Langin, T., Higuet, D., Maurer, P., & Bazin, C. (1997). Genetica, 100(1/3), 63-72. doi:10.1023/a:1018300721953

Lloréns, C., & Marín, I. (2001). A Mammalian Gene Evolved from the Integrase Domain of an LTR Retrotransposon. Molecular Biology and Evolution, 18(8), 1597-1600. doi:10.1093/oxfordjournals.molbev.a003947

Wells, D. J. (1999). Tdd-4, a DNA transposon of Dictyostelium that encodes proteins similar to LTR retroelement integrases. Nucleic Acids Research, 27(11), 2408-2415. doi:10.1093/nar/27.11.2408

Marin, I. (2010). GIN Transposons: Genetic Elements Linking Retrotransposons and Genes. Molecular Biology and Evolution, 27(8), 1903-1911. doi:10.1093/molbev/msq072

GAO, X., & VOYTAS, D. (2005). A eukaryotic gene family related to retroelement integrases. Trends in Genetics, 21(3), 133-137. doi:10.1016/j.tig.2005.01.006

Nowotny, M. (2009). Retroviral integrase superfamily: the structural perspective. EMBO reports, 10(2), 144-151. doi:10.1038/embor.2008.256

Kumar, S., Nei, M., Dudley, J., & Tamura, K. (2008). MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics, 9(4), 299-306. doi:10.1093/bib/bbn017

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem