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Phylogeography and molecular evolution of Potato virus Y

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Phylogeography and molecular evolution of Potato virus Y

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dc.contributor.author Cuevas Torrijos, Jose Manuel es_ES
dc.contributor.author Delaunay, Agnes es_ES
dc.contributor.author Visser, Johan C. es_ES
dc.contributor.author Bellstedt, Dirk U. es_ES
dc.contributor.author Jacquot, Emmanuel es_ES
dc.contributor.author Elena Fito, Santiago Fco es_ES
dc.date.accessioned 2014-08-28T09:47:12Z
dc.date.available 2014-08-28T09:47:12Z
dc.date.issued 2012-05
dc.identifier.issn 1932-6203
dc.identifier.uri http://hdl.handle.net/10251/39268
dc.description.abstract Potato virus Y (PVY) is an important plant pathogen, whose host range includes economically important crops such as potato, tobacco, tomato, and pepper. PVY presents three main strains (PVYO, PVYN and PVYC) and several recombinant forms. PVY has a worldwide distribution, yet the mechanisms that promote and maintain its population structure and genetic diversity are still unclear. In this study, we used a pool of 77 complete PVY genomes from isolates collected worldwide. After removing the effect of recombination in our data set, we used Bayesian techniques to study the influence of geography and host species in both PVY population structure and dynamics. We have also performed selection and covariation analyses to identify evolutionarily relevant amino acid residues. Our results show that both geographic and host-driven adaptations explain PVY diversification. Furthermore, purifying selection is the main force driving PVY evolution, although some indications of positive selection accounted for the diversification of the different strains. Interestingly, the analysis of P3N-PIPO, a recently described gene in potyviruses, seems to show a variable length among the isolates analyzed, and this variability is explained, in part, by host-driven adaptation. es_ES
dc.description.sponsorship This research was supported by the Spanish Ministry of Science and Innovation grant BFU2009-06993 to SFE. JMC was supported by the JAE program from CSIC. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. en_EN
dc.language Inglés es_ES
dc.publisher Public Library of Science es_ES
dc.relation.ispartof PLoS ONE es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Plant RNA viruses es_ES
dc.subject Amino-acid sites es_ES
dc.subject Coat protein es_ES
dc.subject Mosaic-virus es_ES
dc.subject Genetic-structure es_ES
dc.subject Selective constraints es_ES
dc.subject Mutational analysis es_ES
dc.subject Maximum-likelihood es_ES
dc.subject Recombinant strain es_ES
dc.subject Venous necrosis es_ES
dc.title Phylogeography and molecular evolution of Potato virus Y es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1371/journal.pone.0037853
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BFU2009-06993/ES/Biologia Evolutiva Y De Sistemas De La Emergencia De Fitovirus De Rna/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Cuevas Torrijos, JM.; Delaunay, A.; Visser, JC.; Bellstedt, DU.; Jacquot, E.; Elena Fito, SF. (2012). Phylogeography and molecular evolution of Potato virus Y. PLoS ONE. 7(5):37853-37853. https://doi.org/10.1371/journal.pone.0037853 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1371/journal.pone.0037853 es_ES
dc.description.upvformatpinicio 37853 es_ES
dc.description.upvformatpfin 37853 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 7 es_ES
dc.description.issue 5 es_ES
dc.relation.senia 232197
dc.identifier.pmid 22655074 en_EN
dc.identifier.pmcid PMC3360008 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Consejo Superior de Investigaciones Científicas es_ES
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