- -

Assessing the usability of a science gateway for medical knowledge bases with TRENCADIS

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

Assessing the usability of a science gateway for medical knowledge bases with TRENCADIS

Show full item record

Maestre Urbano, CV.; Segrelles Quilis, JD.; Torres Serrano, E.; Blanquer Espert, I.; Medina, R.; Hernández García, V.; Martí, L. (2012). Assessing the usability of a science gateway for medical knowledge bases with TRENCADIS. Journal of Grid Computing. 10(4):665-688. doi:10.1007/s10723-012-9243-2

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/39672

Files in this item

Item Metadata

Title: Assessing the usability of a science gateway for medical knowledge bases with TRENCADIS
Author: Maestre Urbano, Cristina Victoria Segrelles Quilis, José Damián Torres Serrano, Erik Blanquer Espert, Ignacio Medina, Rosana Hernández García, Vicente Martí, Luis
UPV Unit: Universitat Politècnica de València. Instituto de Instrumentación para Imagen Molecular - Institut d'Instrumentació per a Imatge Molecular
Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació
Issued date:
Abstract:
Biomedical applications are often built on top of knowledge bases that contain medical images and clinical reports. Currently, these bases are being used to improve diagnosis, research and teaching, but in many cases, the ...[+]
Subjects: DICOM , DICOM-SR , Knowledge base , Usability
Copyrigths: Cerrado
Source:
Journal of Grid Computing. (issn: 1570-7873 )
DOI: 10.1007/s10723-012-9243-2
Publisher:
Springer Verlag (Germany)
Publisher version: http://link.springer.com/article/10.1007%2Fs10723-012-9243-2
Project ID:
Spanish Ministry of Education and Science [TIN2010-17804]
Vicerectorat d'Investigacio de la Universitat Politecnica de Valencia (UPV)
Thanks:
The authors wish to thank the financial support received from The Spanish Ministry of Education and Science to develop the project "Code-Cloud", with reference TIN2010-17804, and the financial support received from The ...[+]
Type: Artículo

References

Afgan, E., Goecks, J., Baker, D., Coraor, N., Team The Galaxy, Nekrutenko, A., Taylor, J.: Galaxy—a gateway to tools in e-Science. In: Yang, X., Wang, L., Jie, W. (eds.) Guide to e-Science: Next Generation Scientific Research and Discovery, pp. 145–180. Springer (2011)

Aisen, A.M., Broderick, L.S., Winer-Muram, H., Brodley, C.E., Kak, A.C., Pavlopoulou, C., Dy, J., Shyu, C.R., Marchiori, A.: Automated storage and retrieval of thin-section CT images to assist diagnosis: system description and preliminary assessment. Radiology 228(1), 265–270 (2003)

Allcock, W.: GridFTP: protocol extensions to FTP for the Grid. Tech. rep., Argonne National Laboratory (2003). http://www.ggf.org/documents/GFD.20.pdf [+]
Afgan, E., Goecks, J., Baker, D., Coraor, N., Team The Galaxy, Nekrutenko, A., Taylor, J.: Galaxy—a gateway to tools in e-Science. In: Yang, X., Wang, L., Jie, W. (eds.) Guide to e-Science: Next Generation Scientific Research and Discovery, pp. 145–180. Springer (2011)

Aisen, A.M., Broderick, L.S., Winer-Muram, H., Brodley, C.E., Kak, A.C., Pavlopoulou, C., Dy, J., Shyu, C.R., Marchiori, A.: Automated storage and retrieval of thin-section CT images to assist diagnosis: system description and preliminary assessment. Radiology 228(1), 265–270 (2003)

Allcock, W.: GridFTP: protocol extensions to FTP for the Grid. Tech. rep., Argonne National Laboratory (2003). http://www.ggf.org/documents/GFD.20.pdf

Andronico, G., Ardizzone, V., Barbera, R., Becker, B., Bruno, R., Calanducci, A., Carvalho, D., Ciuffo, L., Fargetta, M., Giorgio, E., Rocca, G., Masoni, A., Paganoni, M., Ruggieri, F., Scardaci, D.: e-Infrastructures for e-Science: a global view. J. Grid Computing 9(2), 155–184 (2011). doi: 10.1007/s10723-011-9187-y

Bastien, J.M.C.: Usability testing: a review of some methodological and technical aspects of the method. Int. J. Med. Inform. 79(4), e18–e23 (2010)

Bastien, J.M.C., Scapin, D.L.: Ergonomic Criteria for the Evaluation of Human-Computer Interfaces (1993)

Blanquer, I., Hernández, V., Segrelles, D., Torres, E.: Enhancing privacy and authorization control scalability in the Grid through ontologies. IEEE Trans. Inf. Technol. Biomed. 13(1), 16–24 (2009). doi: 10.1109/TITB.2008.2003369

Blanquer, I., Hernández, V., Salavert, J., Segrelles, D.: Integrating TRENCADIS components in gLite to share DICOM medical images and structured reports. Stud. Health Technol. Inform. 159, 64–75 (2010)

Blanquer Espert, I., Hernández García, V., Meseguer Anastásio, F.J., Segrelles Quilis, J.D.: Content-based organisation of virtual repositories of DICOM objects. Future Gener. Comput. Syst. 25(6), 627–637 (2009). doi: 10.1016/j.future.2008.12.004

Buyya, R., Yeo, C.S., Venugopal, S., Broberg, J., Brandic, I.: Cloud computing and emerging IT platforms: vision, hype, and reality for delivering computing as the 5th utility. Future Gener. Comput. Syst. 25(6), 599–616 (2009). doi: 10.1016/j.future.2008.12.001

Clunie, D.A.: DICOM Structured Reporting. PixelMed, Bangor (2000)

Cockburn, A.: Writing Effective Use Cases. Addison-Wesley Professional (2000)

Costa, C., Ferreira, C., Bastião, L., Ribeiro, L., Silva, A., Oliveira, J.: Dicoogle—an open source peer-to-peer PACS. J. Digit. Imaging 24(5), 848–856 (2011). doi: 10.1007/s10278-010-9347-9

Cunsolo, V.D., Distefano, S., Puliafito, A., Scarpa, M.L.: GS3: a Grid storage system with security features. J. Grid Computing 8(3), 391–418 (2010). doi: 10.1007/s10723-010-9157-9

Dumas, J.S., Redish, J.: A Practical Guide to Usability Testing. Intellect Ltd (1999)

European Commission: A digital agenda for Europe. Communication 5(245 final/2), 42 (2010)

European Commission: Riding the wave—how Europe can gain from the rising tide of scientific data. Final report of the High Level Expert Group on Scientific Data. Tech. Rep. October, European Commission (2010)

European Commission: Safeguarding privacy in a connected world a European data protection framework for the 21st century. Tech. rep., European Commission, Brussels, Belgium (2012)

Freund, J., Comaniciu, D., Ioannis, Y., Liu, P., McClatchey, R., Morley-Fletcher, E., Pennec, X., Pongiglione, G., Xiang, Zhou: Health-e-child: an integrated biomedical platform for Grid-based paediatric applications. Stud. Health Technol. Inform. 120, 259–270 (2006)

Fuster-Garcia, E., Navarro, C., Vicente, J., Tortajada, S., García-Gómez, J.M., Sáez, C., Calvar, J., Griffiths, J., Julià-Sapé, M., Howe, F.A., Pujol, J., Peet, A.C., Heerschap, A., Moreno-Torres, A., Martínez-Bisbal, M.C., Martínez-Granados, B., Wesseling, P., Semmler, W., Capellades, J., Majós, C., Alberich-Bayarri, A., Capdevila, A., Monleón, D., Martí-Bonmatí, L., Arús, C., Celda, B., Robles, M.: Compatibility between 3T 1H SV-MRS data and automatic brain tumour diagnosis support systems based on databases of 1.5T 1H SV-MRS spectra. Magma (N.Y. N.Y.) 24(1), 35–42 (2011). doi: 10.1007/s10334-010-0241-8

Geer, L.Y., Marchler-Bauer, A., Geer, R.C., Han, L., He, J., He, S., Liu, C., Shi, W., Bryant, S.H.: The NCBI BioSystems database. Nucleic Acids Res. 38(Database issue), D492–6 (2010). doi: 10.1093/nar/gkp858

Giger, M.L.: Intelligent CAD workstation for breast imaging using similarity to known lesions and multiple visual prompt aids. Proc. SPIE 4684, 768–773 (2002). doi: 10.1117/12.467222

Grethe, J.S., Baru, C., Gupta, A., James, M., Ludaescher, B., Martone, M.E., Papadopoulos, P.M., Peltier, S.T., Rajasekar, A., Santini, S., Zaslavsky, I.N., Ellisman, M.H.: Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease. Stud. Health Technol. Inform. 112, 100–109 (2005)

Hornbak, K.: Current practice in measuring usability: challenges to usability studies and research. Int. J. Human-Comput. Stud. 64(2), 79–102 (2006). doi: 10.1016/j.ijhcs.2005.06.002

ISO—International Organization for Standardization: Ergonomic requirements for office work with visual display terminals (VDTs)—part 11: guidance on usability (1998)

ISO—International Organization for Standardization: Software engineering—product quality—part 4: quality in use metrics (2004)

Jaspers, M.W.M.: A comparison of usability methods for testing interactive health technologies: methodological aspects and empirical evidence. Int. J. Med. Inform. 78(5), 340–353 (2009)

Kranzlmüller, D., Lucas, J.M., Öster, P.: The European Grid Initiative (EGI). In: Davoli, F., Pugliese, R., Meyer, N., Zappatore, S. (eds.) Remote Instrumentation and Virtual Laboratories, pp. 61–66. Springer (2010). doi: 10.1007/978-1-4419-5597-5_6

Langlotz, C.P.: RadLex: a new method for indexing online educational materials. Radiographics 26(6), 1595–1597. doi: 10.1148/rg.266065168

Lee, K.P., Hu, J.: XML schema representation of DICOM structured reporting. J. Am. Med. Inform. Assoc. 10(2), 213–223 (2003)

Lenert, L., Sundwall, D.N.: Public health surveillance and meaningful use regulations: a crisis of opportunity. Am. J. Publ. Health 102(3), e1–e7 (2012). doi: 10.2105/AJPH.2011.300542

Lewis, J.: IBM computer usability satisfaction questionnaires: psychometric evaluation and instructions for use. Int. J. Hum.-Comput. Interact. 7(1), 57–78 (1995). doi: 10.1080/10447319509526110

Lewis, J.R.: Psychometric evaluation of the PSSUQ using data from five years of usability studies. Int. J. Hum.-Comput. Interact. 14(3–4), 463–488 (2002). doi: 10.1080/10447318.2002.9669130

Lindland, O.I., Sindre, G., Solvberg, A.: Understanding quality in conceptual modeling. IEEE Softw. 11(2), 42–49 (1994). doi: 10.1109/52.268955

Llorente, I.M., Moreno-Vozmediano, R., Montero, R.S.: Cloud computing for on-demand resource provisioning. In: Gentzsch, W., Grandinetti, L., Joubert, G. (eds.) High Speed and Large Scale Scientific Computing, pp. 177–191. IOS Press, Amsterdam (2009). doi: 10.3233/978-1-60750-073-5-177

Napel, S.A., Beaulieu, C.F., Rodriguez, C., Cui, J., Xu, J., Gupta, A., Korenblum, D., Greenspan, H., Ma, Y., Rubin, D.L.: Automated retrieval of CT images of liver lesions on the basis of image similarity: method and preliminary results. Radiology 256(1), 243–252 (2010)

Nielsen, J.: Usability Engineering, vol. 44. Morgan Kaufmann (1993)

OGF—Open Grid Forum: The Storage Resource Manager Interface Specification Version 2.2. Tech. rep. (2008). http://www.ogf.org/documents/GFD.129.pdf

OGF—Open Grid Forum: A simple API for Grid applications (SAGA). Tech. rep. (2011). http://www.ogf.org/documents/GFD.90.pdf

OGF—Open Grid Forum: Data Format Description Language (DFDL) v1.0 Specification. Tech. rep. (2011). http://www.ogf.org/documents/GFD.174.pdf

OGF—Open Grid Forum: Distributed Resource Management Application API Version 2 (DRMAA). Tech. rep. (2012). http://www.ogf.org/documents/GFD.194.pdf

Pereira, J.A., Quach, S., Hamid, J.S., Heidebrecht, C.L., Quan, S.D., Nassif, J., Diniz, A.J., Exan, R.V., Malawski, J., Gentry, A., Finkelstein, M., Guay, M., Buckeridge, D.L., Bettinger, J.A., Kalailieff, D., Kwong, J.C.: Exploring the feasibility of integrating barcode scanning technology into vaccine inventory recording in seasonal influenza vaccination clinics. Vaccine 30(4), 794–802 (2012). doi: 10.1016/j.vaccine.2011.11.043

Ramos-Pollán, R., Guevara-López, M.A., Suárez-Ortega, C., Díaz-Herrero, G., Franco-Valiente, J.M., Rubio-Del-Solar, M., González-de Posada, N., Vaz, M.A.P., Loureiro, J., Ramos, I.: Discovering mammography-based machine learning classifiers for breast cancer diagnosis. J. Med. Syst. 36(4), 2259–2269 (2012). doi: 10.1007/s10916-011-9693-2

Redolfi, A., McClatchey, R., Anjum, A., Zijdenbos, A., Manset, D., Barkhof, F., Spenger, C., Legré, Y., Wahlund, L.O., Pietro, C.B.d.S., B Frisoni, G.: Grid infrastructures for computational neuroscience: the neuGRID example. Future Neurol. 4(6), 703–722 (2009). doi: 10.2217/fnl.09.53

Rimal, B.P., Jukan, A., Katsaros, D., Goeleven, Y.: Architectural requirements for cloud computing cystems: an enterprise cloud approach. J. Grid Computing 9(1), 3–26 (2010). doi: 10.1007/s10723-010-9171-y

Rings, T., Caryer, G., Gallop, J., Grabowski, J., Kovacikova, T., Schulz, S., Stokes-Rees, I.: Grid and cloud computing: opportunities for integration with the next generation network. J. Grid Computing 7(3), 375–393 (2009). doi: 10.1007/s10723-009-9132-5

Rodero-Merino, L., Vaquero, L.M., Gil, V., Galán, F., Fontán, J., Montero, R.S., Llorente, I.M.: From infrastructure delivery to service management in clouds. Future Gener. Comput. Syst. 26(8), 1226–1240 (2010). doi: 10.1016/j.future.2010.02.013

Rosenthal, A., Mork, P., Li, M.H., Stanford, J., Koester, D., Reynolds, P.: Cloud computing: a new business paradigm for biomedical information sharing. Journal of Biomedical Informatics 43(2), 342–353 (2010)

Ruch, P., Gobeill, J., Lovis, C., Geissbühler, A.: Automatic medical encoding with SNOMED categories. BMC Med. Inform. Decis. Mak. 8(Suppl 1), S6 (2008). doi: 10.1186/1472-6947-8-S1-S6

Salavert Torres, J., Maestre Urbano, C.V., Segrelles Quilis, J.D., Blanquer Espert, I., Garcia, H.V., Martí Bonmatí, L.: Grid prototype to support cancer of breast diagnostics in clinic practice. In: IBERGRID’2010—4th Iberian Grid Infrastructure Conference. Netbiblo, Braga, pp. 285–294 (2010)

Saleem, J., Haggstrom, D., Militello, L., Flanagan, M., Kiess, C., Arbuckle, N., Doebbeling, B.: Redesign of a computerized clinical reminder for colorectal cancer screening: a human-computer interaction evaluation. BMC Med. Inform. Decis. Mak. 11(1), 74 (2011). doi: 10.1186/1472-6947-11-74

Schwiegelshohn, U., Badia, R.M., Bubak, M., Danelutto, M., Dustdar, S., Gagliardi, F., Geiger, A., Hluchy, L., Kranzlmüller, D., Laure, E.: Perspectives on Grid computing. Future Gener. Comput. Syst. 26(8), 1104–1115 (2010). doi: 10.1016/j.future.2010.05.010

Segrelles, D., Blanquer, I., Salavert, J., Hernandez, V., Franco, J.M., Diaz, G., Ramos, R., Medina, R., Marti, L., Guevara, M.A., Gonzalez, N., Loureiro, J., Ramos, I.: Exchanging data for breast cancer diagnosis on heterogeneous Grid platforms. Comput. Inform. 31(1), 3–15 (2012)

Serco Usability Services: Performance Measurement Handbook, version 3 edn. Middlesex, UK (1995)

Shapiro, S.S., Wilk, M.B.: An analysis of variance test for normality (complete samples). Biometrika 52(3–4), 591–611 (1965). doi: 10.1093/biomet/52.3-4.591

Silva, L., Costa, C., Oliveira, J.: A PACS archive architecture supported on cloud services. Int. J. Comput. Assist. Radiol. Surg. 7(3), 349–358 (2012). doi: 10.1007/s11548-011-0625-x

Teng, C.C., Mitchell, J., Walker, C., Swan, A., Davila, C., Howard, D., Needham, T.: A medical image archive solution in the cloud. In: 2010 IEEE International Conference on Software Engineering and Service Sciences (ICSESS), pp. 431–434 (2010). doi: 10.1109/ICSESS.2010.5552343

Van Rijsbergen, C.J.: Information retrieval. In: The Kluwer International Series on Information Retrieval, vol. 30. Butterworths (1979). doi: 10.1016/0020-0271(68)90016-8

Weiss, D.L., Langlotz, C.P.: Structured reporting: patient care enhancement or productivity nightmare? Radiology 249(3), 739–747 (2008). doi: 10.1148/radiol.2493080988

Wess, M.L., Saleem, J.J., Tsevat, J., Luckhaupt, S.E., Johnston, J.A., Wise, R.E., Kopke, J.E., Eckman, M.H.: Usability of an atrial fibrillation anticoagulation decision-support tool. J. Prim. Care Community Health 2(2), 100–106 (2011). doi: 10.1177/2150131910387608

Zentner, L.K., Clark, S.M., Smith, P.M., Shivarajapura, S., Farnsworth, V., Madhavan, K.P.C., Klimeck, G.: Practical considerations in cloud utilization for the science gateway nanoHUB.org. In: 2011 Fourth IEEE International Conference on Utility and Cloud Computing (UCC), pp. 287–292 (2011). doi: 10.1109/UCC.2011.46

Zhao, L., Lee, K.P., Hu, J.: Generating XML schemas for DICOM structured reporting templates. J. Am. Med. Inform. Assoc. 12(1), 72–83 (2005)

Zheng, B., Mello-Thoms, C., Wang, X.H., Abrams, G.S., Sumkin, J.H., Chough, D.M., Ganott, M.A., Lu, A., Gur, D.: Interactive computer-aided diagnosis of breast masses: computerized selection of visually similar image sets from a reference library. Acad. Radiol. 14(8), 917–927 (2007)

[-]

This item appears in the following Collection(s)

Show full item record