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Use or abuse of bioinformatic tools: A response to Samach

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Use or abuse of bioinformatic tools: A response to Samach

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Nombre: Muñoz;Mesejo;Gonzalez ...
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dc.contributor.author Muñoz Fambuena, Natalia es_ES
dc.contributor.author Mesejo Conejos, Carlos es_ES
dc.contributor.author Gonzalez Más, Mª Carmen es_ES
dc.contributor.author Primo-Millo, Eduardo es_ES
dc.contributor.author Agustí Fonfría, Manuel es_ES
dc.contributor.author Iglesias, Domingo J. es_ES
dc.date.accessioned 2014-12-02T13:51:21Z
dc.date.issued 2013-03
dc.identifier.issn 0305-7364
dc.identifier.uri http://hdl.handle.net/10251/45116
dc.description.abstract In a recent paper, we described for the first time the effects of fruit on the expression of putative homologues of genes involved in flowering pathways. It was our aim to provide insight into the molecular mechanisms underlying alternate bearing in citrus. However, a bioinformatics-based critique of our and other related papers has been given by Samach in the preceding Viewpoint article in this issue of Annals of Botany. The use of certain bioinformatic tools in a context of structural rather than functional genomics can cast doubts about the veracity of a large amount of data published in recent years. In this response, the contentions raised by Samach are analysed, and rebuttals of his criticisms are presented. es_ES
dc.language Inglés es_ES
dc.publisher Oxford University Press (OUP): Policy H - Oxford Open Option A es_ES
dc.relation.ispartof Annals of Botany es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Candidate genes es_ES
dc.subject Citrus es_ES
dc.subject EST es_ES
dc.subject Flowering es_ES
dc.subject Functional genomics es_ES
dc.subject Homology es_ES
dc.subject Orthology es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.title Use or abuse of bioinformatic tools: A response to Samach es_ES
dc.type Artículo es_ES
dc.embargo.lift 10000-01-01
dc.embargo.terms forever es_ES
dc.identifier.doi 10.1093/aob/mct020
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Producción Vegetal - Departament de Producció Vegetal es_ES
dc.description.bibliographicCitation Muñoz Fambuena, N.; Mesejo Conejos, C.; Gonzalez Más, MC.; Primo-Millo, E.; Agustí Fonfría, M.; Iglesias, DJ. (2013). Use or abuse of bioinformatic tools: A response to Samach. Annals of Botany. 111(3):335-336. doi:10.1093/aob/mct020 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1093/aob/mct020 es_ES
dc.description.upvformatpinicio 335 es_ES
dc.description.upvformatpfin 336 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 111 es_ES
dc.description.issue 3 es_ES
dc.relation.senia 260730
dc.identifier.pmid 23388880 es_ES
dc.identifier.pmcid PMC3579452 es_ES
dc.description.references Aleza, P., Juárez, J., Hernández, M., Pina, J. A., Ollitrault, P., & Navarro, L. (2009). Recovery and characterization of a Citrus clementina Hort. ex Tan. «Clemenules» haploid plant selected to establish the reference whole Citrus genome sequence. BMC Plant Biology, 9(1), 110. doi:10.1186/1471-2229-9-110 es_ES
dc.description.references Huang, X. (1999). CAP3: A DNA Sequence Assembly Program. Genome Research, 9(9), 868-877. doi:10.1101/gr.9.9.868 es_ES
dc.description.references Muñoz-Fambuena, N., Mesejo, C., Carmen González-Mas, M., Primo-Millo, E., Agustí, M., & Iglesias, D. J. (2011). Fruit regulates seasonal expression of flowering genes in alternate-bearing ‘Moncada’ mandarin. Annals of Botany, 108(3), 511-519. doi:10.1093/aob/mcr164 es_ES
dc.description.references Rafalski, J. A. (2002). Plant genomics: Present state and a perspective on future developments. Briefings in Functional Genomics and Proteomics, 1(1), 80-94. doi:10.1093/bfgp/1.1.80 es_ES
dc.description.references Rhee, S. Y. (2005). Bioinformatics. Current Limitations and Insights for the Future: Figure 1. Plant Physiology, 138(2), 569-570. doi:10.1104/pp.104.900153 es_ES
dc.description.references Samach, A. (2012). Congratulations, you have been carefully chosen to represent an important developmental regulator! Annals of Botany, 111(3), 329-333. doi:10.1093/aob/mcs161 es_ES
dc.description.references Vassilev, D., Leunissen, J., Atanassov, A., Nenov, A., & Dimov, G. (2005). Application of Bioinformatics in Plant Breeding. Biotechnology & Biotechnological Equipment, 19(sup3), 139-152. doi:10.1080/13102818.2005.10817293 es_ES


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