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Electronic excited states of guanine-cytosine hairpins and duplexes studied by fluorescence spectroscopy

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Electronic excited states of guanine-cytosine hairpins and duplexes studied by fluorescence spectroscopy

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Brazard, J.; Thazhathveetil, A.; Vayá Pérez, I.; Lewis, F.; Gustavsson, T.; Markovitsi, D. (2013). Electronic excited states of guanine-cytosine hairpins and duplexes studied by fluorescence spectroscopy. Photochemical & Photobiological Sciences Photochemical and Photobiological Sciences. 12(8):1453-1459. https://doi.org/10.1039/c3pp50088h

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Título: Electronic excited states of guanine-cytosine hairpins and duplexes studied by fluorescence spectroscopy
Autor: Brazard, J. Thazhathveetil, A.K. Vayá Pérez, Ignacio Lewis, F.D. Gustavsson, T. Markovitsi, D.
Entidad UPV: Universitat Politècnica de València. Departamento de Química - Departament de Química
Fecha difusión:
Resumen:
[EN] Guanine-cytosine hairpins, containing a hexaethylene glycol bridge, are studied by steady-state fluorescence spectroscopy and time-correlated single photon counting; their properties are compared to those of duplexes ...[+]
Derechos de uso: Reserva de todos los derechos
Fuente:
Photochemical & Photobiological Sciences Photochemical and Photobiological Sciences. (issn: 1474-905X )
DOI: 10.1039/c3pp50088h
Editorial:
Royal Society of Chemistry
Versión del editor: http://dx.doi.org/10.1039/c3pp50088h
Código del Proyecto:
info:eu-repo/grantAgreement/ANR//ANR-10-BLAN-0809/FR/Photo-induced energy transfer in methylated DNA helices and its relevance to UV damage : an interactive theoretical-experimental study/DNAexciton/
info:eu-repo/grantAgreement/GVA//APOSTD%2F2010%2F033/
info:eu-repo/grantAgreement/DOE//DE-FG02-96ER14604/
Agradecimientos:
The French Agency for Research (ANR-10-BLAN-0809-01), the Conselleria de Educacion-Generalitat Valenciana (VALi+D program to I.V., N° 2010033) and the US Department of Energy, Office of Basic Energy Sciences (grant no. ...[+]
Tipo: Artículo

References

Bouvier, B., Dognon, J.-P., Lavery, R., Markovitsi, D., Millié, P., Onidas, D., & Zakrzewska, K. (2003). Influence of Conformational Dynamics on the Exciton States of DNA Oligomers. The Journal of Physical Chemistry B, 107(48), 13512-13522. doi:10.1021/jp036164u

Mezzina, E., Mariani, P., Itri, R., Masiero, S., Pieraccini, S., Spada, G. P., … Gottarelli, G. (2001). The Self-Assembly of a Lipophilic Guanosine Nucleoside into Polymeric Columnar Aggregates: The Nucleoside Structure Contains Sufficient Information To Drive the Process towards a Strikingly Regular Polymer. Chemistry, 7(2), 388-395. doi:10.1002/1521-3765(20010119)7:2<388::aid-chem388>3.0.co;2-v

Markovitsi, D., Gustavsson, T., & Talbot, F. (2007). Excited states and energy transfer among DNA bases in double helices. Photochemical & Photobiological Sciences, 6(7), 717. doi:10.1039/b705674e [+]
Bouvier, B., Dognon, J.-P., Lavery, R., Markovitsi, D., Millié, P., Onidas, D., & Zakrzewska, K. (2003). Influence of Conformational Dynamics on the Exciton States of DNA Oligomers. The Journal of Physical Chemistry B, 107(48), 13512-13522. doi:10.1021/jp036164u

Mezzina, E., Mariani, P., Itri, R., Masiero, S., Pieraccini, S., Spada, G. P., … Gottarelli, G. (2001). The Self-Assembly of a Lipophilic Guanosine Nucleoside into Polymeric Columnar Aggregates: The Nucleoside Structure Contains Sufficient Information To Drive the Process towards a Strikingly Regular Polymer. Chemistry, 7(2), 388-395. doi:10.1002/1521-3765(20010119)7:2<388::aid-chem388>3.0.co;2-v

Markovitsi, D., Gustavsson, T., & Talbot, F. (2007). Excited states and energy transfer among DNA bases in double helices. Photochemical & Photobiological Sciences, 6(7), 717. doi:10.1039/b705674e

Vayá, I., Gustavsson, T., Douki, T., Berlin, Y., & Markovitsi, D. (2012). Electronic Excitation Energy Transfer between Nucleobases of Natural DNA. Journal of the American Chemical Society, 134(28), 11366-11368. doi:10.1021/ja304328g

Kohler, B. (2010). Nonradiative Decay Mechanisms in DNA Model Systems. The Journal of Physical Chemistry Letters, 1(13), 2047-2053. doi:10.1021/jz100491x

Markovitsi, D., Gustavsson, T., & Vayá, I. (2010). Fluorescence of DNA Duplexes: From Model Helices to Natural DNA. The Journal of Physical Chemistry Letters, 1(22), 3271-3276. doi:10.1021/jz101122t

Markovitsi, D., Onidas, D., Talbot, F., Marguet, S., Gustavsson, T., & Lazzarotto, E. (2006). UVB/UVC induced processes in model DNA helices studied by time-resolved spectroscopy: Pitfalls and tricks. Journal of Photochemistry and Photobiology A: Chemistry, 183(1-2), 1-8. doi:10.1016/j.jphotochem.2006.05.029

Vayá, I., Miannay, F.-A., Gustavsson, T., & Markovitsi, D. (2010). High-Energy Long-Lived Excited States in DNA Double Strands. ChemPhysChem, 11(5), 987-989. doi:10.1002/cphc.201000027

Miannay, F.-A., Bányász, Á., Gustavsson, T., & Markovitsi, D. (2007). Ultrafast Excited-State Deactivation and Energy Transfer in Guanine−Cytosine DNA Double Helices. Journal of the American Chemical Society, 129(47), 14574-14575. doi:10.1021/ja077100q

(s. f.). doi:10.1021/ja073448

Sobolewski, A. L., Domcke, W., & Hattig, C. (2005). Tautomeric selectivity of the excited-state lifetime of guanine/cytosine base pairs: The role of electron-driven proton-transfer processes. Proceedings of the National Academy of Sciences, 102(50), 17903-17906. doi:10.1073/pnas.0504087102

Abo-Riziq, A., Grace, L., Nir, E., Kabelac, M., Hobza, P., & de Vries, M. S. (2004). Photochemical selectivity in guanine-cytosine base-pair structures. Proceedings of the National Academy of Sciences, 102(1), 20-23. doi:10.1073/pnas.0408574102

Altmann, S., Labhardt, A. M., Bur, D., Lehmann, C., Bannwarth, W., Billeter, M., … Leupin, W. (1995). NMR studies of DNA duplexes singly cross-linked by different synthetic linkers. Nucleic Acids Research, 23(23), 4827-4835. doi:10.1093/nar/23.23.4827

Kozerski, L. (2001). A nicked duplex decamer DNA with a PEG6 tether. Nucleic Acids Research, 29(5), 1132-1143. doi:10.1093/nar/29.5.1132

Rumney, S., & Kool, E. T. (1995). Structural Optimization of Non-Nucleotide Loop Replacements for Duplex and Triplex DNAs. Journal of the American Chemical Society, 117(21), 5635-5646. doi:10.1021/ja00126a004

Hariharan, M., Siegmund, K., & Lewis, F. D. (2010). Structure and Stability of Alkane-Linked DNA Hairpin Conjugates. The Journal of Organic Chemistry, 75(18), 6236-6243. doi:10.1021/jo1013299

Lewis, F. D., Letsinger, R. L., & Wasielewski, M. R. (2001). Dynamics of Photoinduced Charge Transfer and Hole Transport in Synthetic DNA Hairpins. Accounts of Chemical Research, 34(2), 159-170. doi:10.1021/ar0000197

McCullagh, M., Hariharan, M., Lewis, F. D., Markovitsi, D., Douki, T., & Schatz, G. C. (2010). Conformational Control of TT Dimerization in DNA Conjugates. A Molecular Dynamics Study. The Journal of Physical Chemistry B, 114(15), 5215-5221. doi:10.1021/jp100983t

McCullagh, M., Zhang, L., Karaba, A. H., Zhu, H., Schatz, G. C., & Lewis, F. D. (2008). Effect of Loop Distortion on the Stability and Structural Dynamics of DNA Hairpin and Dumbbell Conjugates. The Journal of Physical Chemistry B, 112(36), 11415-11421. doi:10.1021/jp802378a

Onidas, D., Markovitsi, D., Marguet, S., Sharonov, A., & Gustavsson, T. (2002). Fluorescence Properties of DNA Nucleosides and Nucleotides:  A Refined Steady-State and Femtosecond Investigation. The Journal of Physical Chemistry B, 106(43), 11367-11374. doi:10.1021/jp026063g

Riazance, J. H., Baase, W. A., Johnson, W. C., Hall, K., Cruz, P., & Tinoco, I. (1985). Evidence for Z-form RNA by vacuum UV circular dichroism. Nucleic Acids Research, 13(13), 4983-4989. doi:10.1093/nar/13.13.4983

Tuma, J., Tonzani, S., Schatz, G. C., Karaba, A. H., & Lewis, F. D. (2007). Structure and Electronic Spectra of DNA Mini-hairpins with Gn:CnStems. The Journal of Physical Chemistry B, 111(45), 13101-13106. doi:10.1021/jp072303m

Georghiou, S., Kubala, S. M., & Large, C. C. (1998). Environmental Control of the Deformability of the DNA Double Helix. Photochemistry and Photobiology, 67(5), 526-531. doi:10.1111/j.1751-1097.1998.tb09088.x

Zuo, X., Cui, G., Merz, K. M., Zhang, L., Lewis, F. D., & Tiede, D. M. (2006). X-ray diffraction «fingerprinting» of DNA structure in solution for quantitative evaluation of molecular dynamics simulation. Proceedings of the National Academy of Sciences, 103(10), 3534-3539. doi:10.1073/pnas.0600022103

Marguet, S., Markovitsi, D., Millié, P., Sigal, H., & Kumar, S. (1998). Influence of Disorder on Electronic Excited States:  An Experimental and Numerical Study of Alkylthiotriphenylene Columnar Phases. The Journal of Physical Chemistry B, 102(24), 4697-4710. doi:10.1021/jp980623n

Albrecht, A. C. (1961). Polarizations and assignments of transitions: The method of photoselection. Journal of Molecular Spectroscopy, 6, 84-108. doi:10.1016/0022-2852(61)90234-x

Hua, Y., Changenet-Barret, P., Gustavsson, T., & Markovitsi, D. (2013). The effect of size on the optical properties of guanine nanostructures: a femtosecond to nanosecond study. Physical Chemistry Chemical Physics, 15(19), 7396. doi:10.1039/c3cp00060e

Mariani, P., & Saturni, L. (1996). Measurement of intercolumnar forces between parallel guanosine four-stranded helices. Biophysical Journal, 70(6), 2867-2874. doi:10.1016/s0006-3495(96)79856-9

Gustavsson, T., Improta, R., & Markovitsi, D. (2010). DNA/RNA: Building Blocks of Life Under UV Irradiation. The Journal of Physical Chemistry Letters, 1(13), 2025-2030. doi:10.1021/jz1004973

Hare, P. M., Crespo-Hernandez, C. E., & Kohler, B. (2006). Internal conversion to the electronic ground state occurs via two distinct pathways for pyrimidine bases in aqueous solution. Proceedings of the National Academy of Sciences, 104(2), 435-440. doi:10.1073/pnas.0608055104

Scholes, G. D., & Ghiggino, K. P. (1994). Electronic Interactions and Interchromophore Excitation Transfer. The Journal of Physical Chemistry, 98(17), 4580-4590. doi:10.1021/j100068a017

Nachtigallová, D., Hobza, P., & Ritze, H.-H. (2008). Electronic splitting in the excited states of DNA base homodimers and -trimers: an evaluation of short-range and Coulombic interactions. Physical Chemistry Chemical Physics, 10(37), 5689. doi:10.1039/b806323k

Starikov, E. B., Cuniberti, G., & Tanaka, S. (2009). Conformation Dependence of DNA Exciton Parentage. The Journal of Physical Chemistry B, 113(30), 10428-10435. doi:10.1021/jp9035869

Plasser, F., Aquino, A. J. A., Hase, W. L., & Lischka, H. (2012). UV Absorption Spectrum of Alternating DNA Duplexes. Analysis of Excitonic and Charge Transfer Interactions. The Journal of Physical Chemistry A, 116(46), 11151-11160. doi:10.1021/jp304725r

Sauri, V., Gobbo, J. P., Serrano-Pérez, J. J., Lundberg, M., Coto, P. B., Serrano-Andrés, L., … Roca-Sanjuán, D. (2012). Proton/Hydrogen Transfer Mechanisms in the Guanine–Cytosine Base Pair: Photostability and Tautomerism. Journal of Chemical Theory and Computation, 9(1), 481-496. doi:10.1021/ct3006166

Groenhof, G., Schäfer, L. V., Boggio-Pasqua, M., Goette, M., Grubmüller, H., & Robb, M. A. (2007). Ultrafast Deactivation of an Excited Cytosine−Guanine Base Pair in DNA. Journal of the American Chemical Society, 129(21), 6812-6819. doi:10.1021/ja069176c

Giudice, E. (2003). Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations. Nucleic Acids Research, 31(5), 1434-1443. doi:10.1093/nar/gkg239

Folta-Stogniew, E., & Russu, I. M. (1994). Sequence Dependence of Base-Pair Opening in a DNA Dodecamer Containing the CACA/GTGT Sequence Motif. Biochemistry, 33(36), 11016-11024. doi:10.1021/bi00202a022

Schwalb, N. K., & Temps, F. (2008). Base Sequence and Higher-Order Structure Induce the Complex Excited-State Dynamics in DNA. Science, 322(5899), 243-245. doi:10.1126/science.1161651

Vayá, I., Brazard, J., Gustavsson, T., & Markovitsi, D. (2012). Electronically excited states of DNA oligonucleotides with disordered base sequences studied by fluorescence spectroscopy. Photochemical & Photobiological Sciences, 11(11), 1767. doi:10.1039/c2pp25180a

Pan, Z., Hariharan, M., Arkin, J. D., Jalilov, A. S., McCullagh, M., Schatz, G. C., & Lewis, F. D. (2011). Electron Donor–Acceptor Interactions with Flanking Purines Influence the Efficiency of Thymine Photodimerization. Journal of the American Chemical Society, 133(51), 20793-20798. doi:10.1021/ja205460f

Špačková, N., Berger, I., & Šponer, J. (1999). Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules. Journal of the American Chemical Society, 121(23), 5519-5534. doi:10.1021/ja984449s

Münzel, M., Szeibert, C., Glas, A. F., Globisch, D., & Carell, T. (2011). Discovery and Synthesis of New UV-Induced Intrastrand C(4−8)G and G(8−4)C Photolesions. Journal of the American Chemical Society, 133(14), 5186-5189. doi:10.1021/ja111304f

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