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Evolutionary signals of selection on cognition from the great tit genome and methylome

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Evolutionary signals of selection on cognition from the great tit genome and methylome

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dc.contributor.author Laine, Veronika N. es_ES
dc.contributor.author Gossmann, Toni I. es_ES
dc.contributor.author Schachtschneider, Kyle M. es_ES
dc.contributor.author Garroway, Colin J. es_ES
dc.contributor.author Madsen, Ole es_ES
dc.contributor.author Verhoeven, Koen J. F. es_ES
dc.contributor.author de Jager, Victor es_ES
dc.contributor.author Megens, Hendrik-Jan es_ES
dc.contributor.author Warren, Wesley C. es_ES
dc.contributor.author Minx, Patrick es_ES
dc.contributor.author Crooijmans, Richard P. M. A. es_ES
dc.contributor.author Corcoran, Padraic es_ES
dc.contributor.author Great Tit HapMap Consortium es_ES
dc.contributor.author Sheldon, Ben C. es_ES
dc.contributor.author Slate, Jon es_ES
dc.date.accessioned 2016-04-21T13:32:37Z
dc.date.available 2016-04-21T13:32:37Z
dc.date.issued 2016-01
dc.identifier.issn 2041-1723
dc.identifier.uri http://hdl.handle.net/10251/62805
dc.description.abstract [EN] For over 50 years, the great tit (Parus major) has been a model species for research in evolutionary, ecological and behavioural research; in particular, learning and cognition have been intensively studied. Here, to provide further insight into the molecular mechanisms behind these important traits, we de novo assemble a great tit reference genome and whole-genome re-sequence another 29 individuals from across Europe. We show an overrepresentation of genes related to neuronal functions, learning and cognition in regions under positive selection, as well as increased CpG methylation in these regions. In addition, great tit neuronal non-CpG methylation patterns are very similar to those observed in mammals, suggesting a universal role in neuronal epigenetic regulation which can affect learning-, memory-and experience-induced plasticity. The high-quality great tit genome assembly will play an instrumental role in furthering the integration of ecological, evolutionary, behavioural and genomic approaches in this model species. es_ES
dc.description.sponsorship We thank Eveline Verhulst for help with the methylome data, Christa Mateman for lab assistance, Martijn Derks for calculating the sliding windows, Tieshan Xu for the help with the Trinity assembly, Louise Dittmar for the help in dN/dS and diversity analysis, Christian Huber for help on the sweep analysis and Jun-Mo Kim who designed the SNP chip. K.M.S. was supported by a grant from the Cooperative Research Program for Agriculture Science & Technology Development (PJ009103) of the Rural Development Administration, Republic of Korea. T.I.G., P.C. and K.Z. were supported by a BBSRC grant (BB/K000209/1) and a NERC grant (NE/L005328/1) awarded to K.Z., C.J.G. was funded by Natural Environment Research Council (NERC) (NE/K01126X/1). K.J.F.V. was funded by the Dutch Organisation for Scientific Research, NWO VIDI grant (864.10.008). B.C.S. was funded by ERC Advanced Grant (250164) and by a Wolfson Merit Award from the Royal Society. J.S. was funded by a European Research Council (ERC) Starting grant, Avian EGG (202487) and a Natural Environment Research Council (NERC), The Great Tit HapMap Project (NE/J012599/1). M.E.V. was supported by the Netherlands Organisation for Scientific Research (NWO-VICI grant) and the European Research Council (ERC-2013-AdG 339092).
dc.language Inglés es_ES
dc.publisher Nature Publishing Group: Nature Communications es_ES
dc.relation.ispartof Nature Communications es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Wild bird population es_ES
dc.subject Sequencing data es_ES
dc.subject Phenotypic plasticity es_ES
dc.subject Parus major es_ES
dc.subject Clutch size es_ES
dc.subject Alignment es_ES
dc.subject Generation es_ES
dc.subject History es_ES
dc.subject Memory es_ES
dc.subject Life es_ES
dc.subject.classification ZOOLOGIA es_ES
dc.title Evolutionary signals of selection on cognition from the great tit genome and methylome es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1038/ncomms10474
dc.relation.projectID info:eu-repo/grantAgreement/UKRI//NE%2FK01126X%2FK1/GB/Spatial ecological genomics of free-ranging Great tits/
dc.relation.projectID info:eu-repo/grantAgreement/RDA//PJ009103/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/UKRI//NE%2FJ012599%2FK1/GB/Spatial ecological genomics of free-ranging Great tits/
dc.relation.projectID info:eu-repo/grantAgreement/NWO//864.10.008/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement//UKRI/NE%2FL005328%2F1/GB/Evolutionary ecological genomics of the great tit/
dc.relation.projectID info:eu-repo/grantAgreement//NWO//2300162398/NL/
dc.relation.projectID info:eu-repo/grantAgreement/UKRI///BB%2FK000209%2F1/GB/The effects of natural selection on genome-wide patterns of genetic variation/
dc.relation.projectID info:eu-repo/grantAgreement/EC/FP7/250164/EU/Evolutionary Social Ecology in Wild Populations/
dc.relation.projectID info:eu-repo/grantAgreement/EC/FP7/202487/EU/Evolutionary genetics in a ‘classical’ avian study system by high throughput transcriptome sequencing and SNP genotyping/
dc.relation.projectID info:eu-repo/grantAgreement/EC/FP7/339092/EU/Evolutionary responses to a warming world: physiological genomics of seasonal timing/
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto de Investigación para la Gestión Integral de Zonas Costeras - Institut d'Investigació per a la Gestió Integral de Zones Costaneres es_ES
dc.description.bibliographicCitation Laine, VN.; Gossmann, TI.; Schachtschneider, KM.; Garroway, CJ.; Madsen, O.; Verhoeven, KJF.; De Jager, V.... (2016). Evolutionary signals of selection on cognition from the great tit genome and methylome. Nature Communications. 7. https://doi.org/10.1038/ncomms10474 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1038/ncomms10474 es_ES
dc.description.upvformatpinicio 10474 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 7 es_ES
dc.relation.senia 299869 es_ES
dc.identifier.pmid 26805030 en_EN
dc.identifier.pmcid PMC4737754
dc.contributor.funder European Research Council
dc.contributor.funder Biotechnology and Biological Sciences Research Council, Reino Unido
dc.contributor.funder UK Research and Innovation
dc.contributor.funder Netherlands Organization for Scientific Research
dc.contributor.funder International HapMap Project
dc.contributor.funder Rural Development Administration, Corea del Sur
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