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Pre-symptomatic transcriptome changes during cold storage of chilling sensitive and resistant peach cultivars to elucidate chilling injury mechanisms

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Pre-symptomatic transcriptome changes during cold storage of chilling sensitive and resistant peach cultivars to elucidate chilling injury mechanisms

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dc.contributor.author Pons Puig, Clara es_ES
dc.contributor.author Dagar, Anurag es_ES
dc.contributor.author Martí Ibáñez, María Cristina es_ES
dc.contributor.author Singh, Vikram es_ES
dc.contributor.author Crisosto, Carlos H. es_ES
dc.contributor.author Friedman, Haya es_ES
dc.contributor.author Lurie, Susan es_ES
dc.contributor.author Granell Richart, Antonio es_ES
dc.date.accessioned 2016-06-08T08:12:20Z
dc.date.available 2016-06-08T08:12:20Z
dc.date.issued 2015-03-26
dc.identifier.issn 1471-2164
dc.identifier.uri http://hdl.handle.net/10251/65499
dc.description.abstract Background: Cold storage induces chilling injury (CI) disorders in peach fruit (woolliness/mealiness, flesh browning and reddening/bleeding) manifested when ripened at shelf life. To gain insight into the mechanisms underlying CI, we analyzed the transcriptome of 'Oded' (high tolerant) and 'Hermoza' (relatively tolerant to woolliness, but sensitive to browning and bleeding) peach cultivars at pre-symptomatic stages. The expression profiles were compared and validated with two previously analyzed pools (high and low sensitive to woolliness) from the Pop-DG population. The four fruit types cover a wide range of sensitivity to CI. The four fruit types were also investigated with the ROSMETER that provides information on the specificity of the transcriptomic response to oxidative stress. Results: We identified quantitative differences in a subset of core cold responsive genes that correlated with sensitivity or tolerance to CI at harvest and during cold storage, and also subsets of genes correlating specifically with high sensitivity to woolliness and browning. Functional analysis indicated that elevated levels, at harvest and during cold storage, of genes related to antioxidant systems and the biosynthesis of metabolites with antioxidant activity correlates with tolerance. Consistent with these results, ROSMETER analysis revealed oxidative stress in 'Hermoza' and the progeny pools, but not in the cold resistant 'Oded'. By contrast, cold storage induced, in sensitivity to woolliness dependant manner, a gene expression program involving the biosynthesis of secondary cell wall and pectins. Furthermore, our results indicated that while ethylene is related to CI tolerance, differential auxin subcellular accumulation and signaling may play a role in determining chilling sensitivity/tolerance. In addition, sugar partitioning and demand during cold storage may also play a role in the tolerance/sensitive mechanism. The analysis also indicates that vesicle trafficking, membrane dynamics and cytoskeleton organization could have a role in the tolerance/sensitive mechanism. In the case of browning, our results suggest that elevated acetaldehyde related genes together with the core cold responses may increase sensitivity to browning in shelf life. Conclusions: Our data suggest that in sensitive fruit a cold response program is activated and regulated by auxin distribution and ethylene and these hormones have a role in sensitivity to CI even before fruit are cold stored. es_ES
dc.description.sponsorship This research was funded by US-Israel Binational Agriculture Research and Development Fund (BARD) Grant no. US-4027-07. We thank the European Science Foundation for Short Term Scientific Mission grants to A. Dagar (COST Action 924, reference codes COST-STSM-924-04254 and Quality Fruit COST FA1106 for networking. en_EN
dc.language Inglés es_ES
dc.publisher BioMed Central es_ES
dc.relation.ispartof BMC Genomics es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Rosaceae es_ES
dc.subject Microarray es_ES
dc.subject Peach es_ES
dc.subject Woolliness es_ES
dc.subject Internal browning es_ES
dc.subject Reddening es_ES
dc.title Pre-symptomatic transcriptome changes during cold storage of chilling sensitive and resistant peach cultivars to elucidate chilling injury mechanisms es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1186/s12864-015-1395-6
dc.relation.projectID info:eu-repo/grantAgreement/COST//924/EU/Enhancement and Preservation of Quality and Health Promoting Components in Fresh Fruits and Vegetables/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/COST//FA1106/EU/An integrated systems approach to determine the developmental mechanisms controlling fleshy fruit quality in tomato and grapevine/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/COST//924-04254/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/BARD//US-4027-07/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Pons Puig, C.; Dagar, A.; Martí Ibáñez, MC.; Singh, V.; Crisosto, CH.; Friedman, H.; Lurie, S.... (2015). Pre-symptomatic transcriptome changes during cold storage of chilling sensitive and resistant peach cultivars to elucidate chilling injury mechanisms. BMC Genomics. 16:1-35. https://doi.org/10.1186/s12864-015-1395-6 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1186/s12864-015-1395-6 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 35 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 16 es_ES
dc.relation.senia 304714 es_ES
dc.identifier.pmid 25887353 en_EN
dc.identifier.pmcid PMC4391166 en_EN
dc.contributor.funder European Cooperation in Science and Technology es_ES
dc.contributor.funder U.S. - Israel Binational Agricultural Research and Development Fund es_ES
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