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Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

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Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

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Tarazona Campos, S.; Furió Tarí, P.; Turrà, D.; Di Pietro, A.; Nueda, MJ.; Ferrer, A.; Conesa, A. (2015). Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package. Nucleic Acids Research. 43(21):1-13. https://doi.org/10.1093/nar/gkv711

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Título: Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
Autor: Tarazona Campos, Sonia Furió Tarí, Pedro Turrà, David Di Pietro, Antonio Nueda, María José Ferrer, Alberto Conesa, Ana
Entidad UPV: Universitat Politècnica de València. Escuela Técnica Superior de Ingenieros Industriales - Escola Tècnica Superior d'Enginyers Industrials
Universitat Politècnica de València. Facultad de Administración y Dirección de Empresas - Facultat d'Administració i Direcció d'Empreses
Fecha difusión:
Resumen:
[EN] As the use of RNA-seq has popularized, there is an increasing consciousness of the importance of experimental design, bias removal, accurate quantification and control of false positives for proper data analysis. We ...[+]
Palabras clave: Differential expression , Bioinformatics , NOISeq , Bioconductor , RNA-seq
Derechos de uso: Reconocimiento - No comercial (by-nc)
Fuente:
Nucleic Acids Research. (issn: 0305-1048 ) (eissn: 1362-4962 )
DOI: 10.1093/nar/gkv711
Editorial:
Oxford University Press (OUP)
Versión del editor: https://doi.org/10.1093/nar/gkv711
Código del Proyecto:
info:eu-repo/grantAgreement/EC/FP7/2007-2013, 306000/EU/
info:eu-repo/grantAgreement/MICINN//BIO2008-04638-E/ES/PATHOGENOMICS - REDES TRANSCRIPCIONALES CONTROLADORAS DE VIRULENCIA EN HONGOS FILAMENTOSOS PATOGENOS/
info:eu-repo/grantAgreement/MICINN//DPI2008-06880-C03-03/ES/TECNICAS ESTADISTICAS MULTIVARIANTES PARA EL CONOCIMIENTO, MONITORIZACION Y OPTIMIZACION DE BIOPROCESOS/
Descripción: This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Agradecimientos:
European Union Seventh Framework Programme [FP7/2007-2013, 306000]; Spanish Ministry of Science and Innovation [MICINN, BIO2008-04638-E], in the framework of ERA-Net Pathogenomics; MICINN [DPI2008-06880-C03-03/DPI]. Funding ...[+]
Tipo: Artículo

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