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Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome

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Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome

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dc.contributor.author Díaz Bermúdez, Aurora es_ES
dc.contributor.author Forment Millet, José Javier es_ES
dc.contributor.author Argyris, Jason M. es_ES
dc.contributor.author Fukino, Nobuko es_ES
dc.contributor.author Tzuri, Galil es_ES
dc.contributor.author Harel-Beja, Rotem es_ES
dc.contributor.author Katzir, Nurit es_ES
dc.contributor.author Garcia-Mas, Jordi es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.date.accessioned 2017-04-28T12:38:52Z
dc.date.available 2017-04-28T12:38:52Z
dc.date.issued 2015-10
dc.identifier.issn 1380-3743
dc.identifier.uri http://hdl.handle.net/10251/80227
dc.description.abstract Melon (Cucumis melo L.) genetic maps were compiled by the International Cucurbit Genomics Initiative (ICuGI) before the release of the melon genome. However, due to the use of different marker sets, the position of ICuGI markers in the genome remained unknown, complicating the integration of previous genetic mapping studies in the genome. We looked for the genome position of 870 simple sequence repeat and single nucleotide polymorphism (SNP) markers from the ICuGI map, locating 836 of them in the melon pseudochromosomes v3.5.1, and integrating them with previously available SNPs to reach a total of 1850 markers mapped in the genome sequence. The number of markers per scaffold ranged from 1 to 105, with an average of 13, thus improving on the previous studies in melon. Twenty-three of the markers mapped on virtual chromosome "0'', twelve of them being included in the ICuGI map, which could assist in the anchoring of some unanchored contigs and scaffolds. Genetic and physical distance comparison showed a good collinearity between them, confirming the quality of the ICuGI map. A higher recombination rate was also usually found at the ends of the chromosomes, whereas a drastic reduction was observed in the putative pericentromeric regions. Quantitative trait loci (QTL) previously located in the ICuGI map were also anchored in the genome. This work offers the opportunity to supplement the genetic maps available up to now with the genomic resources resulting from the melon genome sequencing to facilitate comparative mapping in melon between past and new studies, and to overcome some of the current limitations in QTL gene identification. es_ES
dc.description.sponsorship This work was funded in part by the project AGL2012-40130-C02-02 from Spanish Ministry of Economy and Competitiveness (MINECO) to AJM. en_EN
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation.ispartof Molecular Breeding es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Cucumis melo L. es_ES
dc.subject Simple sequence repeat es_ES
dc.subject Single nucleotide polymorphism es_ES
dc.subject Physical map es_ES
dc.subject Genome anchoring es_ES
dc.subject QTL es_ES
dc.subject.classification BIOQUIMICA Y BIOLOGIA MOLECULAR es_ES
dc.title Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s11032-015-0381-7
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//AGL2012-40130-C02-02/ES/DESCIFRANDO LA BASE GENETICA DE LA MORFOLOGIA DEL FRUTO Y LA DOMESTICACION DE MELON/ es_ES
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Díaz Bermúdez, A.; Forment Millet, JJ.; Argyris, JM.; Fukino, N.; Tzuri, G.; Harel-Beja, R.; Katzir, N.... (2015). Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome. Molecular Breeding. 35(10):1-7. https://doi.org/10.1007/s11032-015-0381-7 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1007/s11032-015-0381-7 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 7 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 35 es_ES
dc.description.issue 10 es_ES
dc.relation.senia 305513 es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
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