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Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium

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Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium

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dc.contributor.author Barrantes, Walter es_ES
dc.contributor.author Fernández Del Carmen, María Asunción es_ES
dc.contributor.author Lopez-Casado, Gloria es_ES
dc.contributor.author González-Sánchez, María Ángeles es_ES
dc.contributor.author Fernandez-Munoz, Rafael es_ES
dc.contributor.author Granell Richart, Antonio es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.date.accessioned 2017-05-03T10:48:38Z
dc.date.available 2017-05-03T10:48:38Z
dc.date.issued 2014-12
dc.identifier.issn 1380-3743
dc.identifier.uri http://hdl.handle.net/10251/80397
dc.description.abstract The Solanum pimpinellifolium L. accession TO-937 is resistant to pests due to the presence of type IV glandular trichomes and also has the potential to increase fruit quality traits in tomato cultivars. This accession was selected to develop a genomic library of introgression lines (IL) in the genetic background of tomato cultivar "Moneymaker." In order to increase the accuracy and speed of the IL development process, high-throughput single-nucleotide polymorphism (SNP) genotyping steps were performed in early backcross generations. Five to seven generations were needed to complete the final set of 53 ILs that were characterized with the 8K SNP SOLCAP Infinium array, which demonstrated that the introgressions present in the IL set covered 94 % of the donor genome and that each IL contained an average of 4.25 % (25 Mb) of the donor genome, defining 71 bins of about 10 Mb on average. Additionally, 37 previously undetected, unwanted introgressions were also detected, and most of them very small (< 2 Mb), probably due to double recombination events among the markers used during IL development. Compared to other IL collections recently characterized with high-throughput SNP technologies, the current IL collection contains a significantly lower number of smaller-sized, non-selected introgressions. The combination of several steps of high-throughput genotyping at early generations and the relatively large population size allowed us to construct a collection of ILs with an extraordinary genetic background isogenicity in a relatively short period of time. es_ES
dc.description.sponsorship The authors wish to thank S. Casal and J. Ano and the technical staff at the greenhouse of IBMCP-UPV for their technical assistance. This work was funded in part by Grants AGL2012-40130-C02-02 from the MICINN, and co-funded by FEDER to AJM and P10-AGR-6784 by the Junta de Andalucia to RF-M. WB was supported by a fellowship granted by the Universidad de Costa Rica and CSIC-Spain by way of a collaboration agreement between CSIC/UCR. GL-C was supported by a JAEDoc contract by CSIC co-funded by the European Social Fund (ESF). en_EN
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation.ispartof Molecular Breeding es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject High-resolution melting es_ES
dc.subject SNP es_ES
dc.subject QTL es_ES
dc.subject Tomato es_ES
dc.subject Germplasm es_ES
dc.title Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s11032-014-0141-0
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//AGL2012-40130-C02-02/ES/DESCIFRANDO LA BASE GENETICA DE LA MORFOLOGIA DEL FRUTO Y LA DOMESTICACION DE MELON/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/Junta de Andalucía//P10-AGR-6784/ es_ES
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Barrantes, W.; Fernández Del Carmen, MA.; Lopez-Casado, G.; González-Sánchez, MÁ.; Fernandez-Munoz, R.; Granell Richart, A.; Monforte Gilabert, AJ. (2014). Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium. Molecular Breeding. 34(4):1817-1831. https://doi.org/10.1007/s11032-014-0141-0 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1007/s11032-014-0141-0 es_ES
dc.description.upvformatpinicio 1817 es_ES
dc.description.upvformatpfin 1831 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 34 es_ES
dc.description.issue 4 es_ES
dc.relation.senia 282141 es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
dc.contributor.funder Junta de Andalucía es_ES
dc.contributor.funder European Social Fund es_ES
dc.contributor.funder Consejo Superior de Investigaciones Científicas es_ES
dc.contributor.funder European Regional Development Fund es_ES
dc.contributor.funder Universidad de Costa Rica es_ES
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