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The tomato genome sequence provides insights into fleshy fruit evolution

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The tomato genome sequence provides insights into fleshy fruit evolution

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dc.contributor.author Sato, Shusei es_ES
dc.contributor.author Tabata, Satoshi es_ES
dc.contributor.author Hirakawa, Hideki es_ES
dc.contributor.author Asamizu, Erika es_ES
dc.contributor.author Shirasawa, Kenta es_ES
dc.contributor.author Isobe, Sachiko es_ES
dc.contributor.author Kaneko, Takakazu es_ES
dc.contributor.author Nakamura, Yasukazu es_ES
dc.contributor.author Shibata, Daisuke es_ES
dc.contributor.author Aoki, Koh es_ES
dc.contributor.author Egholm, Michael es_ES
dc.contributor.author Fernández Del Carmen, María Asunción es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.contributor.author Granell Richart, Antonio es_ES
dc.contributor.author Fernandez-Munoz, Rafael es_ES
dc.date.accessioned 2017-05-03T12:17:08Z
dc.date.available 2017-05-03T12:17:08Z
dc.date.issued 2012-05-31
dc.identifier.issn 0028-0836
dc.identifier.uri http://hdl.handle.net/10251/80510
dc.description.abstract [EN] Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. es_ES
dc.description.sponsorship This work was supported by: Argentina: INTA and CONICET. Belgium: Flemish Institute for Biotechnology and Ghent University. China: The State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Ministry of Science and Technology (2006AA10A116, 2004CB720405, 2006CB101907, 2007DFB30080) Ministry of Agriculture ('948' Program: 2007-Z5); National Natural Science Foundation (36171319); Postdoctoral Science Foundation (20070420446). European Union: FP6 Integrated Project EU-SOL PL 016214. France: Institute National de la Recherche Agronomique and Agence Nationale de la Recherche. Germany: the Max Planck Society. India: Department of Biotechnology, Government of India; Indian Council of Agricultural Research. Italy: Ministry of Research (FIRB-SOL, FIRB-Parallelomics, ItaLyco and GenoPOM projects); Ministry of Agriculture (Agronanotech and Biomassval projects); FILAS foundation; ENEA; CNR-ENEA project L. 191/2009. Japan: Kazusa DNA Research Institute Foundation and National Institute of Vegetable and Tea Science. Korea: KRIBB Basic Research Fund and Crop Functional Genomics Research Center (CFGC), MEST. Netherlands: Centre for BioSystemsGenomics, Netherlands Organization for Scientific Research. Spain: Fundacion Genoma Espana; Cajamar; FEPEX; Fundacion Seneca; ICIA; IFAPA; Fundacion Manrique de Lara; Instituto Nacional de Bioinformatica. UK: BBSRC grant BB/C509731/1; DEFRA; SEERAD. USA: NSF (DBI-0116076; DBI-0421634; DBI-0606595; IOS-0923312; DBI-0820612; DBI-0605659; DEB-0316614; DBI 0849896 and MCB 1021718); USDA (2007-02773 and 2007-35300-19739); USDA-ARS. We acknowledge the Potato Genome Sequencing Consortium for sharing data before publication; potato RNA-Seq data was provided by C. R. Buell from the NSF-funded Potato Genome Sequence and Annotation project; tomato RNA-Seq data by the USDA-funded SolCAP project, N. Sinha and J. Maloof; the Amplicon Express team for BAC pooling services; construction of the Whole Genome Profiling (WGP) physical map was supported by EnzaZaden, RijkZwaan, Vilmorin&Cie, and Takii & Co. Keygene N. V. owns patents and patent applications covering its AFLP and Whole Genome Profiling technologies; AFLP and Keygene are registered trademarks of Keygene N. V.
dc.language Inglés es_ES
dc.publisher MOST/2006AA10A116 es_ES
dc.relation.ispartof Nature es_ES
dc.rights Reserva de todos los derechos es_ES
dc.title The tomato genome sequence provides insights into fleshy fruit evolution es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1038/nature11119
dc.relation.projectID info:eu-repo/grantAgreement/MOST//2004CB720405/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/NSF/Directorate for Biological Sciences/0316614/US/ en_EN
dc.relation.projectID info:eu-repo/grantAgreement/EC/FP6/16214/EU/High Quality Solanaceous Crops for Consumers, Processors and Producers by Exploration of Natural Biodiversity/EU-SOL es_ES
dc.relation.projectID info:eu-repo/grantAgreement/China Postdoctoral Science Foundation//20070420446/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/UKRI//BB%2FG02491X%2F1/GB/Integrating genetics and high throughput genomics to identify genes underlying tomato QTL for metabolites that influence fruit quality/TOMQML es_ES
dc.relation.projectID info:eu-repo/grantAgreement/UKRI//BB%2FG006199%2F1/GB/Characterisation of tomato short RNAs involved in fruit development/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MOST//2006CB101907/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MOST//2007DFB30080/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MOA//2007-Z5/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/NSFC//36171319/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/CNR//CNR-ENEA%2FL.191%2F2009/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/UKRI//BB%2FC509731%2F1/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0116076/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0421634/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0606595/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//IOS-0923312/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0820612/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0605659/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DEB-0316614/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//DBI-0849896/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//MCB-1021718/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//2007-02773/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/USDA ARS//2007-35300-19739/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Sato, S.; Tabata, S.; Hirakawa, H.; Asamizu, E.; Shirasawa, K.; Isobe, S.; Kaneko, T.... (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485(7400):635-641. https://doi.org/10.1038/nature11119 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1038/nature11119 es_ES
dc.description.upvformatpinicio 635 es_ES
dc.description.upvformatpfin 641 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 485 es_ES
dc.description.issue 7400 es_ES
dc.relation.senia 233243 es_ES
dc.identifier.pmid 22660326
dc.identifier.pmcid PMC3378239
dc.contributor.funder Ministry of Science and Technology, China
dc.contributor.funder UK Research and Innovation es_ES
dc.contributor.funder China Postdoctoral Science Foundation es_ES
dc.contributor.funder National Natural Science Foundation of China
dc.contributor.funder Ministry of Agriculture and Rural Affairs, China
dc.contributor.funder European Commission
dc.contributor.funder Consiglio Nazionale delle Ricerche, Italia
dc.contributor.funder Biotechnology and Biological Sciences Research Council, Reino Unido
dc.contributor.funder National Science Foundation, EEUU
dc.contributor.funder United States Department of Agriculture, Agricultural Research Service
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