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dc.contributor.author | Sato, Shusei | es_ES |
dc.contributor.author | Tabata, Satoshi | es_ES |
dc.contributor.author | Hirakawa, Hideki | es_ES |
dc.contributor.author | Asamizu, Erika | es_ES |
dc.contributor.author | Shirasawa, Kenta | es_ES |
dc.contributor.author | Isobe, Sachiko | es_ES |
dc.contributor.author | Kaneko, Takakazu | es_ES |
dc.contributor.author | Nakamura, Yasukazu | es_ES |
dc.contributor.author | Shibata, Daisuke | es_ES |
dc.contributor.author | Aoki, Koh | es_ES |
dc.contributor.author | Egholm, Michael | es_ES |
dc.contributor.author | Fernández Del Carmen, María Asunción | es_ES |
dc.contributor.author | Monforte Gilabert, Antonio José | es_ES |
dc.contributor.author | Granell Richart, Antonio | es_ES |
dc.contributor.author | Fernandez-Munoz, Rafael | es_ES |
dc.date.accessioned | 2017-05-03T12:17:08Z | |
dc.date.available | 2017-05-03T12:17:08Z | |
dc.date.issued | 2012-05-31 | |
dc.identifier.issn | 0028-0836 | |
dc.identifier.uri | http://hdl.handle.net/10251/80510 | |
dc.description.abstract | [EN] Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness. | es_ES |
dc.description.sponsorship | This work was supported by: Argentina: INTA and CONICET. Belgium: Flemish Institute for Biotechnology and Ghent University. China: The State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Ministry of Science and Technology (2006AA10A116, 2004CB720405, 2006CB101907, 2007DFB30080) Ministry of Agriculture ('948' Program: 2007-Z5); National Natural Science Foundation (36171319); Postdoctoral Science Foundation (20070420446). European Union: FP6 Integrated Project EU-SOL PL 016214. France: Institute National de la Recherche Agronomique and Agence Nationale de la Recherche. Germany: the Max Planck Society. India: Department of Biotechnology, Government of India; Indian Council of Agricultural Research. Italy: Ministry of Research (FIRB-SOL, FIRB-Parallelomics, ItaLyco and GenoPOM projects); Ministry of Agriculture (Agronanotech and Biomassval projects); FILAS foundation; ENEA; CNR-ENEA project L. 191/2009. Japan: Kazusa DNA Research Institute Foundation and National Institute of Vegetable and Tea Science. Korea: KRIBB Basic Research Fund and Crop Functional Genomics Research Center (CFGC), MEST. Netherlands: Centre for BioSystemsGenomics, Netherlands Organization for Scientific Research. Spain: Fundacion Genoma Espana; Cajamar; FEPEX; Fundacion Seneca; ICIA; IFAPA; Fundacion Manrique de Lara; Instituto Nacional de Bioinformatica. UK: BBSRC grant BB/C509731/1; DEFRA; SEERAD. USA: NSF (DBI-0116076; DBI-0421634; DBI-0606595; IOS-0923312; DBI-0820612; DBI-0605659; DEB-0316614; DBI 0849896 and MCB 1021718); USDA (2007-02773 and 2007-35300-19739); USDA-ARS. We acknowledge the Potato Genome Sequencing Consortium for sharing data before publication; potato RNA-Seq data was provided by C. R. Buell from the NSF-funded Potato Genome Sequence and Annotation project; tomato RNA-Seq data by the USDA-funded SolCAP project, N. Sinha and J. Maloof; the Amplicon Express team for BAC pooling services; construction of the Whole Genome Profiling (WGP) physical map was supported by EnzaZaden, RijkZwaan, Vilmorin&Cie, and Takii & Co. Keygene N. V. owns patents and patent applications covering its AFLP and Whole Genome Profiling technologies; AFLP and Keygene are registered trademarks of Keygene N. V. | |
dc.language | Inglés | es_ES |
dc.publisher | MOST/2006AA10A116 | es_ES |
dc.relation.ispartof | Nature | es_ES |
dc.rights | Reserva de todos los derechos | es_ES |
dc.title | The tomato genome sequence provides insights into fleshy fruit evolution | es_ES |
dc.type | Artículo | es_ES |
dc.identifier.doi | 10.1038/nature11119 | |
dc.relation.projectID | info:eu-repo/grantAgreement/MOST//2004CB720405/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/NSF/Directorate for Biological Sciences/0316614/US/ | en_EN |
dc.relation.projectID | info:eu-repo/grantAgreement/EC/FP6/16214/EU/High Quality Solanaceous Crops for Consumers, Processors and Producers by Exploration of Natural Biodiversity/EU-SOL | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/China Postdoctoral Science Foundation//20070420446/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/UKRI//BB%2FG02491X%2F1/GB/Integrating genetics and high throughput genomics to identify genes underlying tomato QTL for metabolites that influence fruit quality/TOMQML | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/UKRI//BB%2FG006199%2F1/GB/Characterisation of tomato short RNAs involved in fruit development/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/MOST//2006CB101907/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/MOST//2007DFB30080/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/MOA//2007-Z5/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/NSFC//36171319/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/CNR//CNR-ENEA%2FL.191%2F2009/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/UKRI//BB%2FC509731%2F1/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0116076/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0421634/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0606595/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//IOS-0923312/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0820612/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0605659/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DEB-0316614/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//DBI-0849896/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//MCB-1021718/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//2007-02773/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/USDA ARS//2007-35300-19739/ | es_ES |
dc.rights.accessRights | Abierto | es_ES |
dc.contributor.affiliation | Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes | es_ES |
dc.description.bibliographicCitation | Sato, S.; Tabata, S.; Hirakawa, H.; Asamizu, E.; Shirasawa, K.; Isobe, S.; Kaneko, T.... (2012). The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485(7400):635-641. https://doi.org/10.1038/nature11119 | es_ES |
dc.description.accrualMethod | S | es_ES |
dc.relation.publisherversion | http://dx.doi.org/10.1038/nature11119 | es_ES |
dc.description.upvformatpinicio | 635 | es_ES |
dc.description.upvformatpfin | 641 | es_ES |
dc.type.version | info:eu-repo/semantics/publishedVersion | es_ES |
dc.description.volume | 485 | es_ES |
dc.description.issue | 7400 | es_ES |
dc.relation.senia | 233243 | es_ES |
dc.identifier.pmid | 22660326 | |
dc.identifier.pmcid | PMC3378239 | |
dc.contributor.funder | Ministry of Science and Technology, China | |
dc.contributor.funder | UK Research and Innovation | es_ES |
dc.contributor.funder | China Postdoctoral Science Foundation | es_ES |
dc.contributor.funder | National Natural Science Foundation of China | |
dc.contributor.funder | Ministry of Agriculture and Rural Affairs, China | |
dc.contributor.funder | European Commission | |
dc.contributor.funder | Consiglio Nazionale delle Ricerche, Italia | |
dc.contributor.funder | Biotechnology and Biological Sciences Research Council, Reino Unido | |
dc.contributor.funder | National Science Foundation, EEUU | |
dc.contributor.funder | United States Department of Agriculture, Agricultural Research Service | |
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