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dc.contributor.author | Mushegian, Arcady![]() |
es_ES |
dc.contributor.author | Shipunov, Alexey![]() |
es_ES |
dc.contributor.author | Elena Fito, Santiago Fco![]() |
es_ES |
dc.date.accessioned | 2017-05-05T12:16:32Z | |
dc.date.available | 2017-05-05T12:16:32Z | |
dc.date.issued | 2016-08-15 | |
dc.identifier.issn | 1741-7007 | |
dc.identifier.uri | http://hdl.handle.net/10251/80675 | |
dc.description.abstract | Background: The known plant viruses mostly infect angiosperm hosts and have RNA or small DNA genomes. The only other lineage of green plants with a relatively well-studied virome, unicellular chlorophyte algae, is mostly infected by viruses with large DNA genomes. Thus RNA viruses and small DNA viruses seem to completely displace large DNA virus genomes in late branching angiosperms. To understand better the expansion of RNA viruses in the taxonomic span between algae and angiosperms, we analyzed the transcriptomes of 66 non-angiosperm plants characterized by the 1000 Plants Genomes Project. Results: We found homologs of virus RNA-dependent RNA polymerases in 28 non-angiosperm plant species, including algae, mosses, liverworts (Marchantiophyta), hornworts (Anthocerotophyta), lycophytes, a horsetail Equisetum, and gymnosperms. Polymerase genes in algae were most closely related to homologs from double-stranded RNA viruses leading latent or persistent lifestyles. Land plants, in addition, contained polymerases close to the homologs from single-stranded RNA viruses of angiosperms, capable of productive infection and systemic spread. For several polymerases, a cognate capsid protein was found in the same library. Another virus hallmark gene family, encoding the 30 K movement proteins, was found in lycophytes and monilophytes but not in mosses or algae. Conclusions: The broadened repertoire of RNA viruses suggests that colonization of land and growth in anatomical complexity in land plants coincided with the acquisition of novel sets of viruses with different strategies of infection and reproduction. | es_ES |
dc.description.sponsorship | We thank the colleagues at the 1000 Plant Genomes Project for helping us to access the transcriptomes used in this study via the iPlant Collaborative. We are grateful to Javier Forment (IBMCP-CSIC), Vincent Lefort (PhyML), and the E-Biothon team (E-Biothon platform is supported by CNRS, IBM, INRIA, l'Institut Francais de Bioinformatique and SysFera) for expert help with high-performance computing; to Yuri Wolf, Jan Kreuze, Eddie Holmes, and Mang Shi for sharing sequence data and alignments; to Sejo Sabanadzovic, Jan Kreuze, and the anonymous reviewers for helpful virtual discussions and critical remarks; and to Natalia Mushegian for technical assistance. SFF was supported by grants BFU2015-65037P from Spain Ministry of Economy and Competitiveness and PROMETEOII/2014/021 from Generalitat Valenciana. ARM is a Program Director at the US National Science Foundation (NSF); his work on this project was supported by the NSF Independent Research and Development Program, but the statements and opinions expressed herein are made in the personal capacity and do not constitute the endorsement by NSF or the government of the United States. | en_EN |
dc.language | Inglés | es_ES |
dc.publisher | BioMed Central | es_ES |
dc.relation.ispartof | BMC Biology | es_ES |
dc.rights | Reconocimiento (by) | es_ES |
dc.subject | Evolutionary transitions | es_ES |
dc.subject | In silico virus discovery | es_ES |
dc.subject | Metagenomics | es_ES |
dc.subject | Plant evolution | es_ES |
dc.subject | Transcriptome | es_ES |
dc.subject | Virus macroevolution | es_ES |
dc.title | Changes in the composition of the RNA virome mark evolutionary transitions in green plants | es_ES |
dc.type | Artículo | es_ES |
dc.identifier.doi | 10.1186/s12915-016-0288-8 | |
dc.relation.projectID | info:eu-repo/grantAgreement/MINECO//BFU2015-65037-P/ES/EVOLUCION DE VIRUS EN HUESPEDES CON SUSCEPTIBILIDAD VARIABLE: CONSECUENCIAS EN EFICACIA Y VIRULENCIA DE CAMBIOS EN LAS REDES INTERACTOMICAS DE PROTEINAS VIRUS-HUESPED/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/GVA//PROMETEOII%2F2014%2F021/ES/Comparative systems biology of host-virus interactions/ | es_ES |
dc.rights.accessRights | Abierto | es_ES |
dc.contributor.affiliation | Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes | es_ES |
dc.description.bibliographicCitation | Mushegian, A.; Shipunov, A.; Elena Fito, SF. (2016). Changes in the composition of the RNA virome mark evolutionary transitions in green plants. BMC Biology. 14(68):1-14. https://doi.org/10.1186/s12915-016-0288-8 | es_ES |
dc.description.accrualMethod | S | es_ES |
dc.relation.publisherversion | http://dx.doi.org/10.1186/s12915-016-0288-8 | es_ES |
dc.description.upvformatpinicio | 1 | es_ES |
dc.description.upvformatpfin | 14 | es_ES |
dc.type.version | info:eu-repo/semantics/publishedVersion | es_ES |
dc.description.volume | 14 | es_ES |
dc.description.issue | 68 | es_ES |
dc.relation.senia | 323456 | es_ES |
dc.identifier.pmid | 27524491 | en_EN |
dc.identifier.pmcid | PMC4983792 | en_EN |
dc.contributor.funder | Generalitat Valenciana | es_ES |
dc.contributor.funder | Ministerio de Economía y Competitividad | es_ES |
dc.contributor.funder | Institut Français de Bioinformatique | es_ES |
dc.contributor.funder | Centre National de la Recherche Scientifique, Francia | es_ES |
dc.contributor.funder | International Business Machines Corporation | es_ES |
dc.contributor.funder | National Science Foundation, EEUU | |
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