- -

Viroids: A light in the darkness of the lncRNA-directed regulatory networks in plants

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Viroids: A light in the darkness of the lncRNA-directed regulatory networks in plants

Mostrar el registro completo del ítem

Gomez, GG.; Pallás Benet, V. (2013). Viroids: A light in the darkness of the lncRNA-directed regulatory networks in plants. New Phytologist. 198(1):10-15. https://doi.org/10.1111/nph.12196

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/87717

Ficheros en el ítem

Metadatos del ítem

Título: Viroids: A light in the darkness of the lncRNA-directed regulatory networks in plants
Autor: Gomez, Gustavo Germán Pallás Benet, Vicente
Entidad UPV: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Fecha difusión:
Palabras clave: Noncoding RNA , Plant pathology , Plant regulatory networks , Stress response and development , Viroids
Derechos de uso: Reserva de todos los derechos
Fuente:
New Phytologist. (issn: 0028-646X )
DOI: 10.1111/nph.12196
Editorial:
Wiley
Versión del editor: http://doi.org/10.1111/nph.12196
Código del Proyecto:
info:eu-repo/grantAgreement/MICINN//BIO2011-25018/ES/TRAFICO INTRACELULAR, INTERCELULAR Y VASCULAR DE RNAS Y PROTEINAS VIRALES Y SUBVIRALES EN PLANTAS¿/
info:eu-repo/grantAgreement/GVA//PROMETEO%2F2011%2F003/
Agradecimientos:
The authors would like to thank J. A. Daros and S. F. Elena for the critical reading of the manuscript. This work was supported by grant BIO2011-25018 from the Spanish granting agency Dirección General de Investigación ...[+]
Tipo: Artículo

References

Atkins, C. A., Smith, P. M. C., & Rodriguez-Medina, C. (2010). Macromolecules in phloem exudates—a review. Protoplasma, 248(1), 165-172. doi:10.1007/s00709-010-0236-3

Au, P. C. K., Zhu, Q.-H., Dennis, E. S., & Wang, M.-B. (2011). Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants. RNA Biology, 8(3), 404-414. doi:10.4161/rna.8.3.14382

Banerjee, A. K., Lin, T., & Hannapel, D. J. (2009). Untranslated Regions of a Mobile Transcript Mediate RNA Metabolism. Plant Physiology, 151(4), 1831-1843. doi:10.1104/pp.109.144428 [+]
Atkins, C. A., Smith, P. M. C., & Rodriguez-Medina, C. (2010). Macromolecules in phloem exudates—a review. Protoplasma, 248(1), 165-172. doi:10.1007/s00709-010-0236-3

Au, P. C. K., Zhu, Q.-H., Dennis, E. S., & Wang, M.-B. (2011). Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants. RNA Biology, 8(3), 404-414. doi:10.4161/rna.8.3.14382

Banerjee, A. K., Lin, T., & Hannapel, D. J. (2009). Untranslated Regions of a Mobile Transcript Mediate RNA Metabolism. Plant Physiology, 151(4), 1831-1843. doi:10.1104/pp.109.144428

Bardou, F., Merchan, F., Ariel, F., & Crespi, M. (2011). Dual RNAs in plants. Biochimie, 93(11), 1950-1954. doi:10.1016/j.biochi.2011.07.028

Ben Amor, B., Wirth, S., Merchan, F., Laporte, P., d’ Aubenton-Carafa, Y., Hirsch, J., … Crespi, M. (2008). Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Research, 19(1), 57-69. doi:10.1101/gr.080275.108

Buhtz, A., Pieritz, J., Springer, F., & Kehr, J. (2010). Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biology, 10(1), 64. doi:10.1186/1471-2229-10-64

Bungard, R. A. (2004). Photosynthetic evolution in parasitic plants: insight from the chloroplast genome. BioEssays, 26(3), 235-247. doi:10.1002/bies.10405

Campalans, A., Kondorosi, A., & Crespi, M. (2004). Enod40, a Short Open Reading Frame–Containing mRNA, Induces Cytoplasmic Localization of a Nuclear RNA Binding Protein in Medicago truncatula. The Plant Cell, 16(4), 1047-1059. doi:10.1105/tpc.019406

Chinnusamy, V., & Zhu, J.-K. (2009). Epigenetic regulation of stress responses in plants. Current Opinion in Plant Biology, 12(2), 133-139. doi:10.1016/j.pbi.2008.12.006

Clark, M. B., Johnston, R. L., Inostroza-Ponta, M., Fox, A. H., Fortini, E., Moscato, P., … Mattick, J. S. (2012). Genome-wide analysis of long noncoding RNA stability. Genome Research, 22(5), 885-898. doi:10.1101/gr.131037.111

Daros, J.-A. (2002). A chloroplast protein binds a viroid RNA in vivo and facilitates its hammerhead-mediated self-cleavage. The EMBO Journal, 21(4), 749-759. doi:10.1093/emboj/21.4.749

Ding, B. (2009). The Biology of Viroid-Host Interactions. Annual Review of Phytopathology, 47(1), 105-131. doi:10.1146/annurev-phyto-080508-081927

Flores, R., & Semancik, J. S. (1982). Properties of a cell-free system for synthesis of citrus exocortis viroid. Proceedings of the National Academy of Sciences, 79(20), 6285-6288. doi:10.1073/pnas.79.20.6285

Franco-Zorrilla, J. M., Valli, A., Todesco, M., Mateos, I., Puga, M. I., Rubio-Somoza, I., … Paz-Ares, J. (2007). Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics, 39(8), 1033-1037. doi:10.1038/ng2079

Gas, M.-E., Hernández, C., Flores, R., & Daròs, J.-A. (2007). Processing of Nuclear Viroids In Vivo: An Interplay between RNA Conformations. PLoS Pathogens, 3(11), e182. doi:10.1371/journal.ppat.0030182

Gómez, G., Martínez, G., & Pallás, V. (2008). Viroid-Induced Symptoms in Nicotiana benthamiana Plants Are Dependent on RDR6 Activity. Plant Physiology, 148(1), 414-423. doi:10.1104/pp.108.120808

Gómez, G., Martínez, G., & Pallás, V. (2009). Interplay between viroid-induced pathogenesis and RNA silencing pathways. Trends in Plant Science, 14(5), 264-269. doi:10.1016/j.tplants.2009.03.002

Gómez, G., & Pallás, V. (2001). Identification of an In Vitro Ribonucleoprotein Complex Between a Viroid RNA and a Phloem Protein from Cucumber Plants. Molecular Plant-Microbe Interactions, 14(7), 910-913. doi:10.1094/mpmi.2001.14.7.910

Gomez, G., & Pallas, V. (2004). A Long-Distance Translocatable Phloem Protein from Cucumber Forms a Ribonucleoprotein Complex In Vivo with Hop Stunt Viroid RNA. Journal of Virology, 78(18), 10104-10110. doi:10.1128/jvi.78.18.10104-10110.2004

Gómez, G., & Pallás, V. (2007). Mature monomeric forms of Hop stunt viroid resist RNA silencing in transgenic plants. The Plant Journal, 51(6), 1041-1049. doi:10.1111/j.1365-313x.2007.03203.x

Gómez, G., & Pallás, V. (2010). Noncoding RNA Mediated Traffic of Foreign mRNA into Chloroplasts Reveals a Novel Signaling Mechanism in Plants. PLoS ONE, 5(8), e12269. doi:10.1371/journal.pone.0012269

Gómez, G., & Pallás, V. (2010). Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA? Plant Signaling & Behavior, 5(11), 1517-1519. doi:10.4161/psb.5.11.13711

Gómez, G., & Pallas, V. (2012). Studies on Subcellular Compartmentalization of Plant Pathogenic Noncoding RNAs Give New Insights into the Intracellular RNA-Traffic Mechanisms. Plant Physiology, 159(2), 558-564. doi:10.1104/pp.112.195214

Gómez, G., & Pallás, V. (2012). A pathogenic non coding RNA that replicates and accumulates in chloroplasts traffics to this organelle through a nuclear-dependent step. Plant Signaling & Behavior, 7(7), 882-884. doi:10.4161/psb.20463

Gómez, G., Torres, H., & Pallás, V. (2004). Identification of translocatable RNA-binding phloem proteins from melon, potential components of the long-distance RNA transport system. The Plant Journal, 41(1), 107-116. doi:10.1111/j.1365-313x.2004.02278.x

Ham, B.-K., Brandom, J. L., Xoconostle-Cázares, B., Ringgold, V., Lough, T. J., & Lucas, W. J. (2009). A Polypyrimidine Tract Binding Protein, Pumpkin RBP50, Forms the Basis of a Phloem-Mobile Ribonucleoprotein Complex. The Plant Cell, 21(1), 197-215. doi:10.1105/tpc.108.061317

Hannapel, D. J. (2010). A Model System of Development Regulated by the Long-distance Transport of mRNA. Journal of Integrative Plant Biology, 52(1), 40-52. doi:10.1111/j.1744-7909.2010.00911.x

Heo, J. B., & Sung, S. (2010). Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA. Science, 331(6013), 76-79. doi:10.1126/science.1197349

Iorizzo, M., Grzebelus, D., Senalik, D., Szklarczyk, M., Spooner, D., & Simon, P. (2012). Against the traffic. Mobile Genetic Elements, 2(6), 261-266. doi:10.4161/mge.23088

Itaya, A., Matsuda, Y., Gonzales, R. A., Nelson, R. S., & Ding, B. (2002). Potato spindle tuber viroidStrains of Different Pathogenicity Induces and Suppresses Expression of Common and Unique Genes in Infected Tomato. Molecular Plant-Microbe Interactions, 15(10), 990-999. doi:10.1094/mpmi.2002.15.10.990

Itaya, A., Zhong, X., Bundschuh, R., Qi, Y., Wang, Y., Takeda, R., … Ding, B. (2007). A Structured Viroid RNA Serves as a Substrate for Dicer-Like Cleavage To Produce Biologically Active Small RNAs but Is Resistant to RNA-Induced Silencing Complex-Mediated Degradation. Journal of Virology, 81(6), 2980-2994. doi:10.1128/jvi.02339-06

Li, P., Ham, B.-K., & Lucas, W. J. (2011). CmRBP50 Protein Phosphorylation Is Essential for Assembly of a Stable Phloem-mobile High-affinity Ribonucleoprotein Complex. Journal of Biological Chemistry, 286(26), 23142-23149. doi:10.1074/jbc.m111.244129

Lough, T. J., & Lucas, W. J. (2006). INTEGRATIVE PLANT BIOLOGY: Role of Phloem Long-Distance Macromolecular Trafficking. Annual Review of Plant Biology, 57(1), 203-232. doi:10.1146/annurev.arplant.56.032604.144145

Mackiewicz, P., Bodył, A., & Gagat, P. (2011). Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. Theory in Biosciences, 131(1), 1-18. doi:10.1007/s12064-011-0147-7

Martinez de Alba, A. E., Sagesser, R., Tabler, M., & Tsagris, M. (2003). A Bromodomain-Containing Protein from Tomato Specifically Binds Potato Spindle Tuber Viroid RNA In Vitro and In Vivo. Journal of Virology, 77(17), 9685-9694. doi:10.1128/jvi.77.17.9685-9694.2003

Mattick, J. S. (2009). The Genetic Signatures of Noncoding RNAs. PLoS Genetics, 5(4), e1000459. doi:10.1371/journal.pgen.1000459

Melnyk, C. W., Molnar, A., & Baulcombe, D. C. (2011). Intercellular and systemic movement of RNA silencing signals. The EMBO Journal, 30(17), 3553-3563. doi:10.1038/emboj.2011.274

MÜHLBACH, H.-P., & SÄNGER, H. L. (1979). Viroid replication is inhibited by α-amanitin. Nature, 278(5700), 185-188. doi:10.1038/278185a0

Navarro, B., Gisel, A., Rodio, M. E., Delgado, S., Flores, R., & Di Serio, F. (2012). Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing. The Plant Journal, 70(6), 991-1003. doi:10.1111/j.1365-313x.2012.04940.x

Navarro, J.-A., Vera, A., & Flores, R. (2000). A Chloroplastic RNA Polymerase Resistant to Tagetitoxin Is Involved in Replication of Avocado Sunblotch Viroid. Virology, 268(1), 218-225. doi:10.1006/viro.1999.0161

Nohales, M.-A., Flores, R., & Daros, J.-A. (2012). Viroid RNA redirects host DNA ligase 1 to act as an RNA ligase. Proceedings of the National Academy of Sciences, 109(34), 13805-13810. doi:10.1073/pnas.1206187109

Nohales, M.-A., Molina-Serrano, D., Flores, R., & Daros, J.-A. (2012). Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae. Journal of Virology, 86(15), 8269-8276. doi:10.1128/jvi.00629-12

Owens, R. A., Blackburn, M., & Ding, B. (2001). Possible Involvement of the Phloem Lectin in Long-Distance Viroid Movement. Molecular Plant-Microbe Interactions, 14(7), 905-909. doi:10.1094/mpmi.2001.14.7.905

Papaefthimiou, I. (2001). Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing. Nucleic Acids Research, 29(11), 2395-2400. doi:10.1093/nar/29.11.2395

Pelchat, M., Coté, F., & Perreault, J.-P. (2001). Study of the polymerization step of the rolling circle replication of peach latent mosaic viroid. Archives of Virology, 146(9), 1753-1763. doi:10.1007/s007050170061

Pelchat, M., Grenier, C., & Perreault, J.-P. (2002). Characterization of a Viroid-Derived RNA Promoter for the DNA-Dependent RNA Polymerase fromEscherichia coli†. Biochemistry, 41(20), 6561-6571. doi:10.1021/bi025595k

Poltronieri, P., & Santino, A. (2012). Non-coding RNAs in Intercellular and Systemic Signaling. Frontiers in Plant Science, 3. doi:10.3389/fpls.2012.00141

Przybilski, R., Gräf, S., Lescoute, A., Nellen, W., Westhof, E., Steger, G., & Hammann, C. (2005). Functional Hammerhead Ribozymes Naturally Encoded in the Genome of Arabidopsis thaliana. The Plant Cell, 17(7), 1877-1885. doi:10.1105/tpc.105.032730

Rinn, J. L., & Chang, H. Y. (2012). Genome Regulation by Long Noncoding RNAs. Annual Review of Biochemistry, 81(1), 145-166. doi:10.1146/annurev-biochem-051410-092902

Röther, S., & Meister, G. (2011). Small RNAs derived from longer non-coding RNAs. Biochimie, 93(11), 1905-1915. doi:10.1016/j.biochi.2011.07.032

Shimura, H., Pantaleo, V., Ishihara, T., Myojo, N., Inaba, J., Sueda, K., … Masuta, C. (2011). A Viral Satellite RNA Induces Yellow Symptoms on Tobacco by Targeting a Gene Involved in Chlorophyll Biosynthesis using the RNA Silencing Machinery. PLoS Pathogens, 7(5), e1002021. doi:10.1371/journal.ppat.1002021

Sugiyama, R. (2003). CCLS96.1, a Member of a Multicopy Gene Family, may Encode a Non-coding RNA Preferentially Transcribed in Reproductive Organs of Silene latifolia. DNA Research, 10(5), 213-220. doi:10.1093/dnares/10.5.213

Tessitori, M., Maria, G., Capasso, C., Catara, G., Rizza, S., De Luca, V., … Carginale, V. (2007). Differential display analysis of gene expression in Etrog citron leaves infected by Citrus viroid III. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1769(4), 228-235. doi:10.1016/j.bbaexp.2007.03.004

Wang, K. C., & Chang, H. Y. (2011). Molecular Mechanisms of Long Noncoding RNAs. Molecular Cell, 43(6), 904-914. doi:10.1016/j.molcel.2011.08.018

Wang, M.-B., Bian, X.-Y., Wu, L.-M., Liu, L.-X., Smith, N. A., Isenegger, D., … Waterhouse, P. M. (2004). On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proceedings of the National Academy of Sciences, 101(9), 3275-3280. doi:10.1073/pnas.0400104101

Wang, Y., & Ding, B. (2010). Viroids: Small Probes for Exploring the Vast Universe of RNA Trafficking in Plants. Journal of Integrative Plant Biology, 52(1), 28-39. doi:10.1111/j.1744-7909.2010.00900.x

Wassenegger, M., Heimes, S., Riedel, L., & Sänger, H. L. (1994). RNA-directed de novo methylation of genomic sequences in plants. Cell, 76(3), 567-576. doi:10.1016/0092-8674(94)90119-8

Wierzbicki, A. T. (2012). The role of long non-coding RNA in transcriptional gene silencing. Current Opinion in Plant Biology, 15(5), 517-522. doi:10.1016/j.pbi.2012.08.008

Woo, Y., Itaya, A., Owens, R. A., Tang, L., Hammond, R. W., Chou, H., … Ding, B. (1999). Characterization of nuclear import of potato spindle tuber viroid RNA in permeabilized protoplasts. The Plant Journal, 17(6), 627-635. doi:10.1046/j.1365-313x.1999.00412.x

Zhao, Y., Hammond, R. W., & Owens, R. A. (2001). Use of a vector based on Potato virus X in a whole plant assay to demonstrate nuclear targeting of Potato spindle tuber viroid. Journal of General Virology, 82(6), 1491-1497. doi:10.1099/0022-1317-82-6-1491

Zhong, X., & Ding, B. (2008). Distinct RNA motifs mediate systemic RNA trafficking. Plant Signaling & Behavior, 3(1), 58-59. doi:10.4161/psb.3.1.4890

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem