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Diversity of Phytophthora Species Associated with Quercus ilex L. in Three Spanish Regions Evaluated by NGS

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Diversity of Phytophthora Species Associated with Quercus ilex L. in Three Spanish Regions Evaluated by NGS

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dc.contributor.author Mora-Sala, Beatriz es_ES
dc.contributor.author Gramaje Pérez, David es_ES
dc.contributor.author Abad Campos, Paloma es_ES
dc.contributor.author Berbegal Martinez, Monica es_ES
dc.date.accessioned 2020-04-17T12:47:37Z
dc.date.available 2020-04-17T12:47:37Z
dc.date.issued 2019-11 es_ES
dc.identifier.uri http://hdl.handle.net/10251/140824
dc.description.abstract [EN] The diversity of Phytophthora species in declining Fagaceae forests in Europe is increasing in the last years. The genus Quercus is one of the most extended Fagaceae genera in Europe, and Q. ilex is the dominant tree in Spain. The introduction of soil-borne pathogens, such as Phytophthora in Fagaceae forests modifies the microbial community present in the rhizosphere, and has relevant environmental and economic consequences. A better understanding of the diversity of Phytophthora spp. associated with Q. ilex is proposed in this study by using Next Generation Sequencing (NGS) in six Q. ilex stands located in three regions in Spain. Thirty-seven Phytophthora phylotypes belonging to clades 1 to 12, except for clades 4, 5 and 11, are detected in this study, which represents a high diversity of Phytophthora species in holm oak Spanish forests. Phytophthora chlamydospora, P. citrophthora, P. gonapodyides, P. lacustris, P. meadii, P. plurivora, P. pseudocryptogea, P. psychrophila and P. quercina were present in the three regions. Seven phylotypes could not be associated with known Phytophthora species, so they were putatively named as Phytophthora sp. Most of the detected phylotypes corresponded to terrestrial Phytophthora species but aquatic species from clades 6 and 9 were also present in all regions. es_ES
dc.description.sponsorship We would like to thank M. Leon from the Instituto Agroforestal Mediterraneo-UPV (Spain) for its technical assistance. This research was supported by funding from the project AGL2011-30438-C02-01 (Ministerio de Economia y Competitividad, Spain) and Euphresco [Instituto Nacional de Investigacion y Tecnologia Agraria y Agroalimentaria (EUPHESCO-CEP: "Current and Emerging Phytophthoras: Research Supporting Risk Assesssment and Risk Management")]. es_ES
dc.language Inglés es_ES
dc.publisher MDPI AG es_ES
dc.relation.ispartof Forests es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject Forest disease monitoring es_ES
dc.subject Oomycetes es_ES
dc.subject Natural ecosystems es_ES
dc.subject Holm oak decline es_ES
dc.subject.classification BOTANICA es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.title Diversity of Phytophthora Species Associated with Quercus ilex L. in Three Spanish Regions Evaluated by NGS es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.3390/f10110979 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//AGL2011-30438-C02-01/ES/APLICACION DE TECNICAS MOLECULARES PARA VALORAR LA IMPLICACION DE PHYTOPHTHORA SPP. EN EL DECAIMIENTO DE QUERCUS ILEX/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Ecosistemas Agroforestales - Departament d'Ecosistemes Agroforestals es_ES
dc.description.bibliographicCitation Mora-Sala, B.; Gramaje Pérez, D.; Abad Campos, P.; Berbegal Martinez, M. (2019). Diversity of Phytophthora Species Associated with Quercus ilex L. in Three Spanish Regions Evaluated by NGS. Forests. 10(11):1-16. https://doi.org/10.3390/f10110979 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.3390/f10110979 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 16 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 10 es_ES
dc.description.issue 11 es_ES
dc.identifier.eissn 1999-4907 es_ES
dc.relation.pasarela S\401708 es_ES
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
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