Mideros, M. F., Turissini, D. A., Guayazán, N., Ibarra-Avila, H., Danies, G., Cárdenas, M., … Restrepo, S. (2018). Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia - Molecular Phylogeny and Evolution of Fungi, 41(1), 39-55. doi:10.3767/persoonia.2018.41.03
Tremblay, É. D., Duceppe, M.-O., Bérubé, J. A., Kimoto, T., Lemieux, C., & Bilodeau, G. J. (2018). Screening for Exotic Forest Pathogens to Increase Survey Capacity Using Metagenomics. Phytopathology®, 108(12), 1509-1521. doi:10.1094/phyto-02-18-0028-r
Brasier, C. M. (1992). Oak tree mortality in Iberia. Nature, 360(6404), 539-539. doi:10.1038/360539a0
[+]
Mideros, M. F., Turissini, D. A., Guayazán, N., Ibarra-Avila, H., Danies, G., Cárdenas, M., … Restrepo, S. (2018). Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia - Molecular Phylogeny and Evolution of Fungi, 41(1), 39-55. doi:10.3767/persoonia.2018.41.03
Tremblay, É. D., Duceppe, M.-O., Bérubé, J. A., Kimoto, T., Lemieux, C., & Bilodeau, G. J. (2018). Screening for Exotic Forest Pathogens to Increase Survey Capacity Using Metagenomics. Phytopathology®, 108(12), 1509-1521. doi:10.1094/phyto-02-18-0028-r
Brasier, C. M. (1992). Oak tree mortality in Iberia. Nature, 360(6404), 539-539. doi:10.1038/360539a0
Jung, T., Blaschke, H., & Neumann, P. (1996). Isolation, identification and pathogenicity of Phytophthora species from declining oak stands. Forest Pathology, 26(5), 253-272. doi:10.1111/j.1439-0329.1996.tb00846.x
Jung, T., Cooke, D. E. L., Blaschke, H., Duncan, J. M., & Oßwald, W. (1999). Phytophthora quercina sp. nov., causing root rot of European oaks. Mycological Research, 103(7), 785-798. doi:10.1017/s0953756298007734
Jung, T., Blaschke, H., & Osswald, W. (2000). Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease. Plant Pathology, 49(6), 706-718. doi:10.1046/j.1365-3059.2000.00521.x
Jung, T., Hansen, E. M., Winton, L., Oswald, W., & Delatour, C. (2002). Three new species of Phytophthora from European oak forests. Mycological Research, 106(4), 397-411. doi:10.1017/s0953756202005622
Jung, T., Nechwatal, J., Cooke, D. E. L., Hartmann, G., Blaschke, M., Oßwald, W. F., … Delatour, C. (2003). Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycological Research, 107(7), 772-789. doi:10.1017/s0953756203008074
JUNG, T., HUDLER, G. W., JENSEN-TRACY, S. L., GRIFFITHS, H. M., FLEISCHMANN, F., & OSSWALD, W. (2006). Involvement of Phytophthora species in the decline of European beech in Europe and the USA. Mycologist, 19(04), 159. doi:10.1017/s0269915x05004052
Jung, T., Jung, M. H., Cacciola, S. O., Cech, T., Bakonyi, J., Seress, D., … Scanu, B. (2017). Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal. IMA Fungus, 8(2), 219-244. doi:10.5598/imafungus.2017.08.02.02
Robin, C., Desprez-Loustau, M.-L., Capron, G., & Delatour, C. (1998). First record of Phytophthora cinnamomi on cork and holm oaks in France and evidence of pathogenicity. Annales des Sciences Forestières, 55(8), 869-883. doi:10.1051/forest:19980801
Hansen, E., & Delatour, C. (1999). Phytophthora species in oak forests of north-east France. ANNALS OF FOREST SCIENCE, 56(7), 539-547. doi:10.1051/forest:19990702
VETTRAINO, A. M., BARZANTI, G. P., BIANCO, M. C., RAGAZZI, A., CAPRETTI, P., PAOLETTI, E., … VANNINI, A. (2002). Occurrence of Phytophthora species in oak stands in Italy and their association with declining oak trees. Forest Pathology, 32(1), 19-28. doi:10.1046/j.1439-0329.2002.00264.x
Vettraino, A. M., Morel, O., Perlerou, C., Robin, C., Diamandis, S., & Vannini, A. (2005). Occurrence and distribution of Phytophthora species in European chestnut stands, and their association with Ink Disease and crown decline. European Journal of Plant Pathology, 111(2), 169-180. doi:10.1007/s10658-004-1882-0
Rizzo, D. M., Garbelotto, M., Davidson, J. M., Slaughter, G. W., & Koike, S. T. (2002). Phytophthora ramorum as the Cause of Extensive Mortality of Quercus spp. and Lithocarpus densiflorus in California. Plant Disease, 86(3), 205-214. doi:10.1094/pdis.2002.86.3.205
Rizzo, D. M., & Garbelotto, M. (2003). Sudden oak death: endangering California and Oregon forest ecosystems. Frontiers in Ecology and the Environment, 1(4), 197-204. doi:10.1890/1540-9295(2003)001[0197:sodeca]2.0.co;2
Balci, Y., & Halmschlager, E. (2003). Incidence of Phytophthora species in oak forests in Austria and their possible involvement in oak decline. Forest Pathology, 33(3), 157-174. doi:10.1046/j.1439-0329.2003.00318.x
Balci, Y., & Halmschlager, E. (2003). Phytophthora species in oak ecosystems in Turkey and their association with declining oak trees. Plant Pathology, 52(6), 694-702. doi:10.1111/j.1365-3059.2003.00919.x
Balci, Y., Balci, S., Eggers, J., MacDonald, W. L., Juzwik, J., Long, R. P., & Gottschalk, K. W. (2007). Phytophthora spp. Associated with Forest Soils in Eastern and North-Central U.S. Oak Ecosystems. Plant Disease, 91(6), 705-710. doi:10.1094/pdis-91-6-0705
Balci, Y., Balci, S., MacDonald, W. L., & Gottschalk, K. W. (2008). Relative susceptibility of oaks to seven species ofPhytophthoraisolated from oak forest soils. Forest Pathology, 38(6), 394-409. doi:10.1111/j.1439-0329.2008.00559.x
Balci, Y., Balci, S., Blair, J. E., Park, S.-Y., Kang, S., & Macdonald, W. L. (2008). Phytophthora quercetorum sp. nov., a novel species isolated from eastern and north-central USA oak forest soils. Mycological Research, 112(8), 906-916. doi:10.1016/j.mycres.2008.02.008
Vannini, A., & Vettraino, A. (2011). Phytophthora cambivora. Forest Phytophthoras, 1(1). doi:10.5399/osu/fp.1.1.1811
Pérez-Sierra, A., López-García, C., León, M., García-Jiménez, J., Abad-Campos, P., & Jung, T. (2013). Previously unrecorded low-temperaturePhytophthoraspecies associated withQuercusdecline in a Mediterranean forest in eastern Spain. Forest Pathology, 43(4), 331-339. doi:10.1111/efp.12037
Brasier, C. (1996). Phytophthora cinnamomi and oak decline in southern Europe. Environmental constraints including climate change. Annales des Sciences Forestières, 53(2-3), 347-358. doi:10.1051/forest:19960217
Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A. G., Aguín Casal, O., … Chavarriaga, D. (2015). WidespreadPhytophthorainfestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. Forest Pathology, 46(2), 134-163. doi:10.1111/efp.12239
Vannini, A., Bruni, N., Tomassini, A., Franceschini, S., & Vettraino, A. M. (2013). Pyrosequencing of environmental soil samples reveals biodiversity of thePhytophthoraresident community in chestnut forests. FEMS Microbiology Ecology, 85(3), 433-442. doi:10.1111/1574-6941.12132
Jankowiak, R., Stępniewska, H., Bilański, P., & Kolařík, M. (2014). Occurrence of Phytophthora plurivora and other Phytophthora species in oak forests of southern Poland and their association with site conditions and the health status of trees. Folia Microbiologica, 59(6), 531-542. doi:10.1007/s12223-014-0331-5
Scanu, B., Linaldeddu, B. T., Deidda, A., & Jung, T. (2015). Diversity of Phytophthora Species from Declining Mediterranean Maquis Vegetation, including Two New Species, Phytophthora crassamura and P. ornamentata sp. nov. PLOS ONE, 10(12), e0143234. doi:10.1371/journal.pone.0143234
Corcobado, T., Miranda-Torres, J. J., Martín-García, J., Jung, T., & Solla, A. (2016). Early survival of Quercus ilex
subspecies from different populations after infections and co-infections by multiple Phytophthora
species. Plant Pathology, 66(5), 792-804. doi:10.1111/ppa.12627
Corcobado, T., Cubera, E., Pérez-Sierra, A., Jung, T., & Solla, A. (2010). First report ofPhytophthora gonapodyidesinvolved in the decline ofQuercus ilexin xeric conditions in Spain. New Disease Reports, 22, 33. doi:10.5197/j.2044-0588.2010.022.033
Hansen, E. M., Reeser, P. W., & Sutton, W. (2012). PhytophthoraBeyond Agriculture. Annual Review of Phytopathology, 50(1), 359-378. doi:10.1146/annurev-phyto-081211-172946
Català, S., Pérez-Sierra, A., & Abad-Campos, P. (2015). The Use of Genus-Specific Amplicon Pyrosequencing to Assess Phytophthora Species Diversity Using eDNA from Soil and Water in Northern Spain. PLOS ONE, 10(3), e0119311. doi:10.1371/journal.pone.0119311
Jung, T., La Spada, F., Pane, A., Aloi, F., Evoli, M., Horta Jung, M., … Cacciola, S. O. (2019). Diversity and Distribution of Phytophthora Species in Protected Natural Areas in Sicily. Forests, 10(3), 259. doi:10.3390/f10030259
Jung, T., Pérez-Sierra, A., Durán, A., Jung, M. H., Balci, Y., & Scanu, B. (2018). Canker and decline diseases caused by soil- and airborne Phytophthora species in forests and woodlands. Persoonia - Molecular Phylogeny and Evolution of Fungi, 40(1), 182-220. doi:10.3767/persoonia.2018.40.08
Brasier, C. M. (2008). The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology, 57(5), 792-808. doi:10.1111/j.1365-3059.2008.01886.x
O’Brien, P. A., Williams, N., & Hardy, G. E. S. (2009). DetectingPhytophthora. Critical Reviews in Microbiology, 35(3), 169-181. doi:10.1080/10408410902831518
Berlanas, C., Berbegal, M., Elena, G., Laidani, M., Cibriain, J. F., Sagües, A., & Gramaje, D. (2019). The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards. Frontiers in Microbiology, 10. doi:10.3389/fmicb.2019.01142
TABERLET, P., COISSAC, E., HAJIBABAEI, M., & RIESEBERG, L. H. (2012). Environmental DNA. Molecular Ecology, 21(8), 1789-1793. doi:10.1111/j.1365-294x.2012.05542.x
Oulas, A., Pavloudi, C., Polymenakou, P., Pavlopoulos, G. A., Papanikolaou, N., Kotoulas, G., … Iliopoulos, loannis. (2015). Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies. Bioinformatics and Biology Insights, 9, BBI.S12462. doi:10.4137/bbi.s12462
Vettraino, A. M., Bonants, P., Tomassini, A., Bruni, N., & Vannini, A. (2012). Pyrosequencing as a tool for the detection ofPhytophthoraspecies: error rate and risk of false Molecular Operational Taxonomic Units. Letters in Applied Microbiology, 55(5), 390-396. doi:10.1111/j.1472-765x.2012.03310.x
Català, S., Berbegal, M., Pérez-Sierra, A., & Abad-Campos, P. (2016). Metabarcoding and development of new real-time specific assays revealPhytophthoraspecies diversity in holm oak forests in eastern Spain. Plant Pathology, 66(1), 115-123. doi:10.1111/ppa.12541
Prigigallo, M. I., Abdelfattah, A., Cacciola, S. O., Faedda, R., Sanzani, S. M., Cooke, D. E. L., & Schena, L. (2016). Metabarcoding Analysis of Phytophthora Diversity Using Genus-Specific Primers and 454 Pyrosequencing. Phytopathology®, 106(3), 305-313. doi:10.1094/phyto-07-15-0167-r
Scibetta, S., Schena, L., Chimento, A., Cacciola, S. O., & Cooke, D. E. L. (2012). A molecular method to assess Phytophthora diversity in environmental samples. Journal of Microbiological Methods, 88(3), 356-368. doi:10.1016/j.mimet.2011.12.012
Burgess, T. I., McDougall, K. L., Scott, P. M., Hardy, G. E. S., & Garnas, J. (2018). Predictors of Phytophthora
diversity and community composition in natural areas across diverse Australian ecoregions. Ecography, 42(3), 565-577. doi:10.1111/ecog.03904
Mora-Sala, B., Berbegal, M., & Abad-Campos, P. (2018). The Use of qPCR Reveals a High Frequency of Phytophthora quercina in Two Spanish Holm Oak Areas. Forests, 9(11), 697. doi:10.3390/f9110697
Altschul, S. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25(17), 3389-3402. doi:10.1093/nar/25.17.3389
Park, J., Park, B., Veeraraghavan, N., Jung, K., Lee, Y.-H., Blair, J. E., … Kang, S. (2008). Phytophthora Database: A Forensic Database Supporting the Identification and Monitoring of Phytophthora. Plant Disease, 92(6), 966-972. doi:10.1094/pdis-92-6-0966
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32(5), 1792-1797. doi:10.1093/nar/gkh340
Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30(12), 2725-2729. doi:10.1093/molbev/mst197
Felsenstein, J. (1985). CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP. Evolution, 39(4), 783-791. doi:10.1111/j.1558-5646.1985.tb00420.x
Glynou, K., Nam, B., Thines, M., & Maciá-Vicente, J. G. (2017). Facultative root-colonizing fungi dominate endophytic assemblages in roots of nonmycorrhizal Microthlaspi
species. New Phytologist, 217(3), 1190-1202. doi:10.1111/nph.14873
Dhariwal, A., Chong, J., Habib, S., King, I. L., Agellon, L. B., & Xia, J. (2017). MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. Nucleic Acids Research, 45(W1), W180-W188. doi:10.1093/nar/gkx295
Ruiz Gómez, F. J., Navarro-Cerrillo, R. M., Pérez-de-Luque, A., Oβwald, W., Vannini, A., & Morales-Rodríguez, C. (2019). Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis. Scientific Reports, 9(1). doi:10.1038/s41598-019-41804-y
Redondo, M. A., Boberg, J., Stenlid, J., & Oliva, J. (2018). Contrasting distribution patterns between aquatic and terrestrial Phytophthora species along a climatic gradient are linked to functional traits. The ISME Journal, 12(12), 2967-2980. doi:10.1038/s41396-018-0229-3
BRASIER, C. M., ROBREDO, F., & FERRAZ, J. F. P. (1993). Evidence forPhytophthora cinnamomiinvolvement in Iberian oak decline. Plant Pathology, 42(1), 140-145. doi:10.1111/j.1365-3059.1993.tb01482.x
Gallego, B. F. J., de Algaba, A. P., & Fernandez-Escobar, R. (1999). Etiology of oak decline in Spain. Forest Pathology, 29(1), 17-27. doi:10.1046/j.1439-0329.1999.00128.x
SANCHEZ, M. E., CAETANO, P., FERRAZ, J., & TRAPERO, A. (2002). Phytophthora disease of Quercus ilex in south-western Spain. Forest Pathology, 32(1), 5-18. doi:10.1046/j.1439-0329.2002.00261.x
De Sampaio e Paiva Camilo-Alves, C., da Clara, M. I. E., & de Almeida Ribeiro, N. M. C. (2013). Decline of Mediterranean oak trees and its association with Phytophthora cinnamomi: a review. European Journal of Forest Research, 132(3), 411-432. doi:10.1007/s10342-013-0688-z
Serrano, M. S., De Vita, P., Fernández-Rebollo, P., & Sánchez Hernández, M. E. (2011). Calcium fertilizers induce soil suppressiveness to Phytophthora cinnamomi root rot of Quercus ilex. European Journal of Plant Pathology, 132(2), 271-279. doi:10.1007/s10658-011-9871-6
Mora-Sala, B., Abad-Campos, P., & Berbegal, M. (2018). Response of Quercus ilex seedlings to Phytophthora spp. root infection in a soil infestation test. European Journal of Plant Pathology, 154(2), 215-225. doi:10.1007/s10658-018-01650-6
Jung, T., & Burgess, T. I. (2009). Re-evaluation of <I>Phytophthora citricola</I> isolates from multiple woody hosts in Europe and North America reveals a new species, <I>Phytophthora plurivora</I> sp. nov. Persoonia - Molecular Phylogeny and Evolution of Fungi, 22(1), 95-110. doi:10.3767/003158509x442612
Ioos, R., Laugustin, L., Rose, S., Tourvieille, J., & Tourvieille de Labrouhe, D. (2007). Development of a PCR test to detect the downy mildew causal agent Plasmopara halstedii in sunflower seeds. Plant Pathology, 56(2), 209-218. doi:10.1111/j.1365-3059.2006.01500.x
Zhao, J., Wang, X. J., Chen, C. Q., Huang, L. L., & Kang, Z. S. (2007). A PCR-Based Assay for Detection of Puccinia striiformis f. sp. tritici in Wheat. Plant Disease, 91(12), 1669-1674. doi:10.1094/pdis-91-12-1669
Alaei, H., Baeyen, S., Maes, M., Höfte, M., & Heungens, K. (2009). Molecular detection of Puccinia horiana in Chrysanthemum x morifolium through conventional and real-time PCR. Journal of Microbiological Methods, 76(2), 136-145. doi:10.1016/j.mimet.2008.10.001
Mrázková, M., Černý, K., Tomšovský, M., Strnadová, V., Gregorová, B., Holub, V., … Hejná, M. (2013). Occurrence of Phytophthora multivora and Phytophthora plurivora in the Czech Republic. Plant Protection Science, 49(No. 4), 155-164. doi:10.17221/74/2012-pps
[-]