- -

Inbreeding depression load for litter size in Entrepelado and Retinto Iberian pig varieties

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

Inbreeding depression load for litter size in Entrepelado and Retinto Iberian pig varieties

Show full item record

Casellas, J.; Ibañez Escriche, N.; Varona, L.; Rosas, J.; Noguera, J. (2019). Inbreeding depression load for litter size in Entrepelado and Retinto Iberian pig varieties. Journal of Animal Science. 97(5):1979-1986. https://doi.org/10.1093/jas/skz084

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/141441

Files in this item

Item Metadata

Title: Inbreeding depression load for litter size in Entrepelado and Retinto Iberian pig varieties
Author: Casellas, J. Ibañez Escriche, Noelia Varona, L. Rosas, J.P. Noguera, J.L.
UPV Unit: Universitat Politècnica de València. Departamento de Ciencia Animal - Departament de Ciència Animal
Issued date:
Abstract:
[EN] Individual-specific hidden inbreeding depression load (IDL) can be accounted for in livestock populations by appropriate best linear unbiased prediction approaches. This genetic effect has a recessive pattern and ...[+]
Subjects: Best linear unbiased prediction , Iberian pig , Identity-by-descent , Inbreeding depression , Total number born
Copyrigths: Reserva de todos los derechos
Source:
Journal of Animal Science. (issn: 0021-8812 )
DOI: 10.1093/jas/skz084
Publisher:
American Society of Animal Science
Publisher version: https://doi.org/10.1093/jas/skz084
Project ID:
info:eu-repo/grantAgreement/MINECO//CGL2016-80155-R/ES/ANALISIS ¿OMICO¿ DE CARACTERES REPRODUCTIVOS EN UN CRUCE DIAELICO ENTRE TRES ESTIRPES DE CERDO IBERICO/
info:eu-repo/grantAgreement/MCIU//IDI-20170304/ES/Mejora de la eficiencia productiva y de la calidad de la carne en el programa piramidal de mejora genética de ibérico 'Castúa/
Thanks:
The authors gratefully acknowledge the company INGA FOOD SA (Almendralejo, Spain) and its technicians (E. Magallon, M. J. Garcia-Santana, L. Munoz, P. Diaz, D. Iniesta, and M. Ramos), as well as S. Negro (IRTA), for their ...[+]
Type: Artículo

References

Alves, E., Fernández, A., Barragán, C., Ovilo, C., Rodríguez, C., & Silió, L. (2006). Inference of hidden population substructure of the Iberian pig breed using multilocus microsatellite data. Spanish Journal of Agricultural Research, 4(1), 37. doi:10.5424/sjar/2006041-176

CABALLERO, A., & TORO, M. A. (2000). Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genetical Research, 75(3), 331-343. doi:10.1017/s0016672399004449

Casellas, J. (2017). On individual-specific prediction of hidden inbreeding depression load. Journal of Animal Breeding and Genetics, 135(1), 37-44. doi:10.1111/jbg.12308 [+]
Alves, E., Fernández, A., Barragán, C., Ovilo, C., Rodríguez, C., & Silió, L. (2006). Inference of hidden population substructure of the Iberian pig breed using multilocus microsatellite data. Spanish Journal of Agricultural Research, 4(1), 37. doi:10.5424/sjar/2006041-176

CABALLERO, A., & TORO, M. A. (2000). Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genetical Research, 75(3), 331-343. doi:10.1017/s0016672399004449

Casellas, J. (2017). On individual-specific prediction of hidden inbreeding depression load. Journal of Animal Breeding and Genetics, 135(1), 37-44. doi:10.1111/jbg.12308

CASELLAS, J., VARONA, L., IBÁÑEZ-ESCRICHE, N., QUINTANILLA, R., & NOGUERA, J. L. (2008). Skew distribution of founder-specific inbreeding depression effects on the longevity of Landrace sows. Genetics Research, 90(6), 499-508. doi:10.1017/s0016672308009907

Charlesworth, D., & Willis, J. H. (2009). The genetics of inbreeding depression. Nature Reviews Genetics, 10(11), 783-796. doi:10.1038/nrg2664

Dekkers, J. C. M. (1992). Asymptotic response to selection on best linear unbiased predictors of breeding values. Animal Science, 54(3), 351-360. doi:10.1017/s0003356100020808

Esteve-Codina, A., Kofler, R., Himmelbauer, H., Ferretti, L., Vivancos, A. P., Groenen, M. A. M., … Pérez-Enciso, M. (2011). Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof. Heredity, 107(3), 256-264. doi:10.1038/hdy.2011.13

Fabuel, E., Barragán, C., Silió, L., Rodríguez, M. C., & Toro, M. A. (2004). Analysis of genetic diversity and conservation priorities in Iberian pigs based on microsatellite markers. Heredity, 93(1), 104-113. doi:10.1038/sj.hdy.6800488

Fernández, E. N., Legarra, A., Martínez, R., Sánchez, J. P., & Baselga, M. (2017). Pedigree-based estimation of covariance between dominance deviations and additive genetic effects in closed rabbit lines considering inbreeding and using a computationally simpler equivalent model. Journal of Animal Breeding and Genetics, 134(3), 184-195. doi:10.1111/jbg.12267

Fuerst, C., & Sölkner, J. (1994). Additive and Nonadditive Genetic Variances for Milk Yield, Fertility, and Lifetime Performance Traits of Dairy Cattle. Journal of Dairy Science, 77(4), 1114-1125. doi:10.3168/jds.s0022-0302(94)77047-8

García-Cortés, L. A., Martínez-Ávila, J. C., & Toro, M. A. (2010). Fine decomposition of the inbreeding and the coancestry coefficients by using the tabular method. Conservation Genetics, 11(5), 1945-1952. doi:10.1007/s10592-010-0084-x

Gelfand, A. E., & Smith, A. F. M. (1990). Sampling-Based Approaches to Calculating Marginal Densities. Journal of the American Statistical Association, 85(410), 398-409. doi:10.1080/01621459.1990.10476213

Gulisija, D., Gianola, D., Weigel, K. A., & Toro, M. A. (2006). Between-founder heterogeneity in inbreeding depression for production in Jersey cows. Livestock Science, 104(3), 244-253. doi:10.1016/j.livsci.2006.04.007

Hinrichs, D., Meuwissen, T. H. E., Ødegard, J., Holt, M., Vangen, O., & Woolliams, J. A. (2007). Analysis of inbreeding depression in the first litter size of mice in a long-term selection experiment with respect to the age of the inbreeding. Heredity, 99(1), 81-88. doi:10.1038/sj.hdy.6800968

Hoeschele, I., & Vollema, A. R. (1993). Estimation of variance components with dominance and inbreeding in dairy cattle. Journal of Animal Breeding and Genetics, 110(1-6), 93-104. doi:10.1111/j.1439-0388.1993.tb00720.x

Ibáñez-Escriche, N., Varona, L., Magallón, E., & Noguera, J. L. (2014). Crossbreeding effects on pig growth and carcass traits from two Iberian strains. Animal, 8(10), 1569-1576. doi:10.1017/s1751731114001712

Kass, R. E., & Raftery, A. E. (1995). Bayes Factors. Journal of the American Statistical Association, 90(430), 773-795. doi:10.1080/01621459.1995.10476572

Legarra, A., & Vitezica, Z. G. (2015). Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP. Genetics Selection Evolution, 47(1). doi:10.1186/s12711-015-0165-x

Leroy, G. (2014). Inbreeding depression in livestock species: review and meta-analysis. Animal Genetics, 45(5), 618-628. doi:10.1111/age.12178

Martınez, A. M., Delgado, J. V., Rodero, A., & Vega-Pla, J. L. (2000). Genetic structure of the Iberian pig breed using microsatellites. Animal Genetics, 31(5), 295-301. doi:10.1046/j.1365-2052.2000.00645.x

Nagy, I., Gorjanc, G., Curik, I., Farkas, J., Kiszlinger, H., & Szendrő, Z. (2012). The contribution of dominance and inbreeding depression in estimating variance components for litter size in Pannon White rabbits. Journal of Animal Breeding and Genetics, 130(4), 303-311. doi:10.1111/jbg.12022

Ober, C., Hyslop, T., & Hauck, W. W. (1999). Inbreeding Effects on Fertility in Humans: Evidence for Reproductive Compensation. The American Journal of Human Genetics, 64(1), 225-231. doi:10.1086/302198

Perez-Enciso, M., & Gianola, D. (1992). Estimates of genetic parameters for litter size in six strains of Iberian pigs. Livestock Production Science, 32(3), 283-293. doi:10.1016/s0301-6226(12)80007-8

Pujol, B., Zhou, S.-R., Sanchez Vilas, J., & Pannell, J. R. (2009). Reduced inbreeding depression after species range expansion. Proceedings of the National Academy of Sciences, 106(36), 15379-15383. doi:10.1073/pnas.0902257106

Quaas, R. L. (1976). Computing the Diagonal Elements and Inverse of a Large Numerator Relationship Matrix. Biometrics, 32(4), 949. doi:10.2307/2529279

Saccheri, I., Kuussaari, M., Kankare, M., Vikman, P., Fortelius, W., & Hanski, I. (1998). Inbreeding and extinction in a butterfly metapopulation. Nature, 392(6675), 491-494. doi:10.1038/33136

Saura, M., Fernández, A., Rodríguez, M. C., Toro, M. A., Barragán, C., Fernández, A. I., & Villanueva, B. (2013). Genome-Wide Estimates of Coancestry and Inbreeding in a Closed Herd of Ancient Iberian Pigs. PLoS ONE, 8(10), e78314. doi:10.1371/journal.pone.0078314

Saura, M., Fernández, A., Varona, L., Fernández, A. I., de Cara, M., Barragán, C., & Villanueva, B. (2015). Detecting inbreeding depression for reproductive traits in Iberian pigs using genome-wide data. Genetics Selection Evolution, 47(1), 1. doi:10.1186/s12711-014-0081-5

Spiegelhalter, D. J., Best, N. G., Carlin, B. P., & van der Linde, A. (2002). Bayesian measures of model complexity and fit. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 64(4), 583-639. doi:10.1111/1467-9868.00353

Varona, L., Legarra, A., Herring, W., & Vitezica, Z. G. (2018). Genomic selection models for directional dominance: an example for litter size in pigs. Genetics Selection Evolution, 50(1). doi:10.1186/s12711-018-0374-1

Wang, C., Rutledge, J., & Gianola, D. (1994). Bayesian analysis of mixed linear models via Gibbs sampling with an application to litter size in Iberian pigs. Genetics Selection Evolution, 26(2), 91. doi:10.1186/1297-9686-26-2-91

[-]

recommendations

 

This item appears in the following Collection(s)

Show full item record