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Genetic and bioclimatic variation in Solanum pimpinellifolium

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Genetic and bioclimatic variation in Solanum pimpinellifolium

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Zuriaga Garcia, E.; Blanca Postigo, JM.; Cordero Romay, L.; Sifres Cuerda, AG.; Blas-Cerdán, WG.; Morales, R.; Nuez Viñals, F. (2009). Genetic and bioclimatic variation in Solanum pimpinellifolium. Genetic Resources and Crop Evolution. 56(1):39-51. https://doi.org/10.1007/s10722-008-9340-z

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/147318

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Title: Genetic and bioclimatic variation in Solanum pimpinellifolium
Author: Zuriaga Garcia, Elena Blanca Postigo, José Miguel Cordero Romay, Laura Sifres Cuerda, Alicia Gemma Blas-Cerdán, William G. Morales, Rafael NUEZ VIÑALS, FERNANDO
UPV Unit: Universitat Politècnica de València. Instituto Universitario de Conservación y Mejora de la Agrodiversidad Valenciana - Institut Universitari de Conservació i Millora de l'Agrodiversitat Valenciana
Issued date:
Abstract:
[EN] Solanum pimpinellifolium, due to its close relationship to S. lycopersicum, has been a genetic source for many commercially important tomato traits. It is a wild species found in the coastal areas of Peru and Ecuador. ...[+]
Subjects: Andean , Climate , Colonization , Genetic structure , Microsatellite , Solanum pimpinellifolium
Copyrigths: Cerrado
Source:
Genetic Resources and Crop Evolution. (issn: 0925-9864 )
DOI: 10.1007/s10722-008-9340-z
Publisher:
Springer-Verlag
Publisher version: http://doi.org/10.1007/s10722-008-9340-z
Thanks:
We are deeply grateful to Dr. Javier Leon, Dr. Roberto Mendoza, and Dr. Freddy Zuniga of the Universidad Nacional de Piura; Dr. Angel Diaz Celis, and Dr. Umberto Cardoso of the Universidad Nacional Pedro Ruiz Gallo; and ...[+]
Type: Artículo

References

Barnaud A, Deu M, Garine E, McKey D, Joly HI (2007) Local genetic diversity of sorghum in a village in northern Cameroon: structure and dynamics of landraces. Theor Appl Genet 114:237–248

Belkhir K, Borsa P, Chikhi L, Rafaste N, Bonhomme T (1996) Genetix 4.04 Logiciel sous WindowsTM pour la genetiqué des populations. Laboratoire Génome, Populations, Interactions, Université de Montpellier II, Montpellier. Website http://www.genetix.univ-montp2.fr/genetix/genetix.htm (Accessed 13 November 2007)

Bohs L, Olmstead RG (1997) Phylogenetic relationships in Solanum (Solanaceae) based on ndhF sequences. Syst Bot 22:5–17 [+]
Barnaud A, Deu M, Garine E, McKey D, Joly HI (2007) Local genetic diversity of sorghum in a village in northern Cameroon: structure and dynamics of landraces. Theor Appl Genet 114:237–248

Belkhir K, Borsa P, Chikhi L, Rafaste N, Bonhomme T (1996) Genetix 4.04 Logiciel sous WindowsTM pour la genetiqué des populations. Laboratoire Génome, Populations, Interactions, Université de Montpellier II, Montpellier. Website http://www.genetix.univ-montp2.fr/genetix/genetix.htm (Accessed 13 November 2007)

Bohs L, Olmstead RG (1997) Phylogenetic relationships in Solanum (Solanaceae) based on ndhF sequences. Syst Bot 22:5–17

Bonnet E, Van de Peer Y (2002) zt: a software tool for simple and partial Mantel tests. J Stat Softw 7:1–12

Bouxin G (2005) Ginkgo, a multivariate analysis package. J Veg Sci 16:355–359

Caicedo AL, Schall BA (2004) Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene. Mol Ecol 13:1871–1882

Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 32:550–570

Cronin JK, Bundock PC, Henry RJ, Nevo E (2007) Adaptive climatic molecular evolution in wild barley at the Isa defense locus. Proc Natl Acad Sci USA 104:2773–2778

Cuartero J, Nuez F, Díaz A (1984) Catalog of collections of Lycopersicon and Solanum pennellii from Northwest of Peru. TGC Report 34:43–46

Darwin SC, Knapp S, Peralta IE (2003) Tomatoes in the Galápagos Islands: morphology of native and introduced species of Solanum section Lycopersicon (Solanaceae). Syst Biodiv 1:29–54

Del Rio AH, Bamberg JB (2002) Lack of association between genetic and geographical origin characteristics for the wild potato Solanum sucrense. Am J Potato Res 79:335–338

Eva HD, de Miranda EE, Di Bella CM, Gond V, Huber O, Sgrenzaroli M, Jones S, Coutinho A, Dorado A, Guimarães M, Elvidge C, Achard F, Belward AS, Bartholomé E, Baraldi A, De Grandi G, Vogt P, Fritz S, Hartley A (2002) A vegetation map of South America. Office for Official Publications of the European Communities

Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50

Franks SJ, Sim S, Weis AE (2007) Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. Proc Natl Acad Sci USA 104:1278–1282

Gower JC (1966) Some distance properties of latent roots and vector methods used in multivariate analysis. Biometrika 53:325–338

Harter AV, Gardner KA, Falush D, Lentz DL, Bye RA, Rieseberg LH (2004) Origin of extant domesticated sunflowers in eastern North America. Nature 430:201–205

Hijmans RJ, Guarino L, Cruz M, Rojas E (2001) Computer tools for spatial analysis of plant genetic resources data: 1. DIVA-GIS. Plant Genet Resour Newsl 127:15–19

IPGRI (1996) Descriptor for Tomato (Lycopersicon spp.). IPGRI

Jump AS, Hunt J, Martínez-Izquierdo JA, Peñuelas J (2006) Natural selection and climate change: temperature-linked spatial and temporal trends in gene frequency in Fagus sylvatica. Mol Ecol 15:3469–3480

Juvik JA, Berlinger MJ, Ben-David T, Rudich J (1982) Resistance among accessions of the genera Lycopersicon and Solanum to four of the main insect pest of tomato in Israel. Phytoparasitica 10:145–156

Langella O (2002) Populations 1.2.28, Population genetic software. CNRS

Li YC, Fahima T, Krugman T, Beiles A, Röder MS, Korol AB, Nevo E (2000) Parallel microgeographic patterns of genetic diversity and divergence revealed by allozyme, RAPD, and microsatellites in Triticum dicoccoides at Ammiad, Israel. Conserv Genet 1:191–207

Luckwill LC (1943) The genus Lycopersicon: an historical, biological, and taxonomic survey of the wild and cultivated tomatoes. Aberdeen University Press, Aberdeen

Marshall JA, Knapp S, Davey MR, Power JB, Cocking EC, Bennett MD, Cox AV (2001) Molecular systematics of Solanum section Lycopersicum (Lycopersicon) using the nuclear ITS rDNA region. Theor Appl Genet 103:1216–1222

Mason-Gamer RJ, Holsinger KE, Jansen RK (1995) Chloroplast DNA haplotype variation within and among populations of Coreopsis grandiflora. Mol Biol Evol 12:371–381

McGregor CE, van Treuren R, Hoekstra R, van Hintum ThJL (2002) Analysis of the wild potato germplasm of the series Acaulia with AFLPs: implications for ex situ conservation. Theor Appl Genet 104:146–156

Mieslerova B, Lebeda A, Chetelat RT (2000) Variation in response of wild Lycopersicon and Solanum sp. against tomato powdery mildew (Oidium lycopersici). J Phytopathol 148:303–311

Miller P (1754) The gardener’s dictionary. C. Rivington, London

Mitton JB, Duran KL (2004) Genetic variation in piñon pine, Pinus edulis, associated with summer precipitation. Mol Ecol 13:1259–1264

Monrchen M, Cuguen J, Michaelis G, Hanni C, Saumitou-Laprade P (1996) Abundance and length polymorphism of microsatellite repeats in Beta vulgaris L. Theor Appl Genet 92:326–333

Nei M (1977) F-statistics and analysis of gene diversity in subdivided populations. Ann Hum Genet 41:225–233

Nuez F, Cuartero J (1984) Colectas de Lycopersicon y Solanum pennellii en el Noroeste de Perú. Plant Genet Resour Newsl 58:42–45

Nuez F, Morales R, Ruíz JJ, Fernández de Córdova P, Soler S, Valdivieso E, Solórzano V (1993) Recolección de especies hortícolas en Ecuador. Plant Genet Resour Newsl 96:29–33

Nuez F, Morales R, Prohens J, Fernández de Córdova P, Soler S, Valdivieso E, Solórzano V (1999) Germplasm of Solanaceae horticultural crops in the South of Ecuador. Plant Genet Resour Newsl 120:44–47

Nuez F, Picó B (1999) Collections of vegetable crops and wild relatives in the Centre for Conservation and Breeding of the Agricultural Biodiversity (Spain). Plant Genet Resour Newsl 118:68

Nuez F, Prohens J, Blanca JM (2004) Relationships, origin, and diversity of Galápagos tomatoes: implications for the conservation of natural populations. Am J Bot 91:86–99

Owuor ED, Beharav A, Fahima T, Kirzhner VM, Korol AB, Nevo E (2003) Microscale ecological stress causes RAPD molecular selection in wild barley, Neve Yaar microsite, Israel. Genet Resour Crop Evol 50:213–223

Papa R, Gepts P (2003) Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from Mesoamerica. Theor Appl Genet 106:239–250

Peralta IE, Spooner DM (2000) Classification of wild tomatoes: a review. Kurtziana 28:45–54

Peralta IE, Spooner DM (2001) Granule-bound starch synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon). Am J Bot 88:1888–1902

Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959

Powell W, Morgante M, Doyle JJ, McNicol JW, Tingey SV, Rafalski AJ (1996) Genepool variation in genus Glycine subgenus Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics 144:793–803

Qian H, Ricklefs RE, White PS (2005) Beta diversity of angiosperms in temperate floras of eastern Asia and eastern North America. Ecol Lett 8:15–22

Rick CM (1976) Natural variability in wild species of Lycopersicon and its bearing on tomato breeding. Genet Agr 30:249–259

Rick CM, Chetelat RT (1995) Utilization of related wild species for tomato improvement. Acta Hortic 412:21–38

Rick CM, Fobes JF (1975) Allozyme variation in the cultivated tomato and closely related species. Bull Torrey Bot Club 102:376–384

Rick CM, Holle M (1990) Andean Lycopersicon esculentum var. cerasiforme: genetic variation and its evolutionary significance. Econ Bot 44:69–78

Rick CM, Zobel RW, Fobes JF (1974) Four peroxidase loci in red-fruited tomato species: genetics and geographic distribution. Proc Natl Acad Sci USA 71:835–839

Rick CM, Fobes JF, Holle M (1977) Genetic variation in Lycopersicon pimpinellifolium: evidence of evolutionary change in mating systems. Plant Syst Evol 127:139–170

Rick CM, Holle M, Thorp RW (1978) Rates of cross-pollination in Lycopersicon pimpinellifolium: impact of genetic variation in floral characters. Plant Syst Evol 129:31–44

Rick CM, Fobes JF, Tanksley SD (1979) Evolution of mating systems in Lycopersion hirsutum as deduced from genetic variation in electrophoretic and morphological characters. Plant Syst Evol 132:279–298

Rieseberg LH, Soltis DE (1991) Phylogenetic consequences of cytoplasmic flow in plants. Evol Trends Plants 5:65–84

Roselius K, Stephan W, Stadler T (2005) The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics 171:753–763

Sifres A, Picó B, Blanca JM, De Frutos R, Nuez F (2007) Genetic structure of Lycopersicon pimpinellifolium (Solanaceae) populations collected after the ENSO event of 1997–98. Genet Resour Crop Evol 54:359–377

Smulders MJM, Bredemeijer G, Rus-kortekass W, Arens P, Vosman B (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97:264–272

Warnock SJ (1991) Natural habitats of Lycopersicon species. HortScience 26:466–471

Woodward FI (1987) Climate and plant distribution. Cambridge University Press, Cambridge, UK

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