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Identification and Characterization of Stress-Responsive TAS3-Derived TasiRNAs in Melon

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Identification and Characterization of Stress-Responsive TAS3-Derived TasiRNAs in Melon

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dc.contributor.author Cervera-Seco, Luis es_ES
dc.contributor.author Marques, M.C. es_ES
dc.contributor.author Sanz-Carbonell, Alejandro es_ES
dc.contributor.author Márquez-Molins, Joan es_ES
dc.contributor.author CARBONELL, ALBERTO es_ES
dc.contributor.author DAROS ARNAU, JOSE ANTONIO es_ES
dc.contributor.author Gomez, Gustavo Germán es_ES
dc.date.accessioned 2021-01-08T04:31:19Z
dc.date.available 2021-01-08T04:31:19Z
dc.date.issued 2019-11 es_ES
dc.identifier.issn 0032-0781 es_ES
dc.identifier.uri http://hdl.handle.net/10251/158398
dc.description.abstract [EN] Small interfering RNAs (siRNA) are key regulators of gene expression that play essential roles in diverse biological processes. Trans-acting siRNAs (tasiRNAs) are a class of plant-endogenous siRNAs that lead the cleavage of nonidentical transcripts. TasiRNAs are usually involved in fine-tuning development. However, increasing evidence supports that tasiRNAs may be involved in stress response. Melon is a crop of great economic importance extensively cultivated in semiarid regions frequently exposed to changing environmental conditions that limit its productivity. However, knowledge of the precise role of siRNAs in general, and of tasiRNAs in particular, in regulating the response to adverse environmental conditions is limited. Here, we provide the first comprehensive analysis of computationally inferred melon-tasiRNAs responsive to two biotic (viroid-infection) and abiotic (cold treatment) stress conditions. We identify two TAS3-loci encoding to length (TAS3-L) and short (TAS3-S) transcripts. The TAS candidates predicted from small RNA-sequencing data were characterized according to their chromosome localization and expression pattern in response to stress. The functional activity of cmTAS genes was validated by transcript quantification and degradome assays of the tasiRNA precursors and their predicted targets. Finally, the functionality of a representative cmTAS3-derived tasiRNA (TAS3-S) was confirmed by transient assays showing the cleavage of ARF target transcripts. es_ES
dc.description.sponsorship J.M. was the recipient of a predoctoral contract from the ACIF program (ACIF-2017-114) of the Conselleria d¿Educació, Investigació, Cultura i Esport Generalitat Valenciana. A.C. was the recipient of a postdoctoral contract from the Ramón y Cajal program (RYC-2017-21648) from the Ministerio de Ciencia, Innovación y Universidades (MCIU, Spain), Agencia Estatal de Investigación (AEI, Spain) and Fondo Europeo de Desarrollo Regional (FEDER, European Union). The Spanish Ministry of Economy and Competitiveness [grant numbers AGL2016-79825-R, BIO2014-61826-EXP to G.G.]; the Ministerio de Ciencia, Innovacion y Universidades (MCIU, Spain), Agencia Estatal de Investigacion (AEI, Spain) and Fondo Europeo de Desarrollo Regional (FEDER, European Union) [grant numbers BIO2017-83184-R to J.-A.D. and RTI2018-095118-A-100 to A.C.]. es_ES
dc.language Inglés es_ES
dc.publisher Oxford University Press es_ES
dc.relation.ispartof Plant and Cell Physiology es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Cucurbitaceae es_ES
dc.subject NcRNAs es_ES
dc.subject Plant-environment interactions es_ES
dc.subject Regulation of the stress response in crops es_ES
dc.subject RNA silencing es_ES
dc.subject Small RNAs in melon es_ES
dc.title Identification and Characterization of Stress-Responsive TAS3-Derived TasiRNAs in Melon es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1093/pcp/pcz131 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//BIO2014-61826-EXP/ES/OPTIMIZACION PARA USO A ESCALA INDUSTRIAL DE UN SISTEMA PARA LA EXPRESION SELECTIVA DE COMPUESTOS HETEROLOGOS EN CLOROPLASTOS MEDIADO POR NON-CODING RNAS/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MINECO//AGL2016-79825-R/ES/VALIDACION FUNCIONAL DE LAS REDES DE SNCRNAS QUE REGULAN LA REPUESTA A ESTRES EN MELON. ANALISIS DE SU POTENCIAL COMO FUENTE DE TOLERANCIA A CONDICIONES AMBIENTALES ADVERSAS/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/BIO2017-83184-R/ES/VIRUS DE PLANTAS: PATOGENOS Y TAMBIEN VECTORES PARA LA PRODUCCION DE PROTEINAS, METABOLITOS, RNAS Y NANOPARTICULAS/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-095118-A-I00/ES/COMPLEJOS ARGONAUTA1 DE PLANTAS: IDENTIFICACION DE SUS COMPONENTES PROTEICOS Y DE RNA, Y AJUSTE FINO DEL SILENCIAMIENTO MEDIANTE SU PROGRAMACION POR PEQUEÑOS RNAS ARTIFICIALES/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Cervera-Seco, L.; Marques, M.; Sanz-Carbonell, A.; Márquez-Molins, J.; Carbonell, A.; Daros Arnau, JA.; Gomez, GG. (2019). Identification and Characterization of Stress-Responsive TAS3-Derived TasiRNAs in Melon. Plant and Cell Physiology. 60(11):2382-2393. https://doi.org/10.1093/pcp/pcz131 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1093/pcp/pcz131 es_ES
dc.description.upvformatpinicio 2382 es_ES
dc.description.upvformatpfin 2393 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 60 es_ES
dc.description.issue 11 es_ES
dc.identifier.pmid 31290971 es_ES
dc.relation.pasarela S\406644 es_ES
dc.contributor.funder European Regional Development Fund es_ES
dc.contributor.funder Ministerio de Economía y Competitividad es_ES
dc.contributor.funder Agencia Estatal de Investigación es_ES
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