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Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance

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Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance

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Carbonell, A.; Lisón, P.; Daròs, J. (2019). Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance. The Plant Journal. 100(4):720-737. https://doi.org/10.1111/tpj.14466

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Título: Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance
Autor: CARBONELL, ALBERTO Lisón, Purificación Daròs, José-Antonio
Entidad UPV: Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia
Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Fecha difusión:
Resumen:
[EN] RNA interference (RNAi)-based tools are used in multiple organisms to induce antiviral resistance through the sequence-specific degradation of target RNAs by complementary small RNAs. In plants, highly specific antiviral ...[+]
Palabras clave: Syn-tasiRNA , Antiviral resistance , AmiRNA , RNA silencing , Solanum lycopersicum , Tomato spotted wilt virus
Derechos de uso: Reconocimiento (by)
Fuente:
The Plant Journal. (issn: 0960-7412 )
DOI: 10.1111/tpj.14466
Editorial:
Blackwell Publishing
Versión del editor: https://doi.org/10.1111/tpj.14466
Código del Proyecto:
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/BIO2017-83184-R/ES/VIRUS DE PLANTAS: PATOGENOS Y TAMBIEN VECTORES PARA LA PRODUCCION DE PROTEINAS, METABOLITOS, RNAS Y NANOPARTICULAS/
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-095118-A-I00/ES/COMPLEJOS ARGONAUTA1 DE PLANTAS: IDENTIFICACION DE SUS COMPONENTES PROTEICOS Y DE RNA, Y AJUSTE FINO DEL SILENCIAMIENTO MEDIANTE SU PROGRAMACION POR PEQUEÑOS RNAS ARTIFICIALES/
info:eu-repo/grantAgreement/AEI//RYC-2017-21648/
Agradecimientos:
We thank V. Aragones and E. Moya for invaluable technical assistance. This work was supported by grants from Ministerio de Ciencia, Innovacion y Universidades (MCIU, Spain), Agencia Estatal de Investigacion (AEI, Spain) ...[+]
Tipo: Artículo

References

Ai, T., Zhang, L., Gao, Z., Zhu, C. X., & Guo, X. (2011). Highly efficient virus resistance mediated by artificial microRNAs that target the suppressor of PVX and PVY in plants. Plant Biology, 13(2), 304-316. doi:10.1111/j.1438-8677.2010.00374.x

Ali, Z., Ali, S., Tashkandi, M., Zaidi, S. S.-A., & Mahfouz, M. M. (2016). CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion. Scientific Reports, 6(1). doi:10.1038/srep26912

Berkhout, B., & Das, A. T. (2012). HIV-1 Escape From RNAi Antivirals: Yet Another Houdini Action? Molecular Therapy - Nucleic Acids, 1, e26. doi:10.1038/mtna.2012.22 [+]
Ai, T., Zhang, L., Gao, Z., Zhu, C. X., & Guo, X. (2011). Highly efficient virus resistance mediated by artificial microRNAs that target the suppressor of PVX and PVY in plants. Plant Biology, 13(2), 304-316. doi:10.1111/j.1438-8677.2010.00374.x

Ali, Z., Ali, S., Tashkandi, M., Zaidi, S. S.-A., & Mahfouz, M. M. (2016). CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion. Scientific Reports, 6(1). doi:10.1038/srep26912

Berkhout, B., & Das, A. T. (2012). HIV-1 Escape From RNAi Antivirals: Yet Another Houdini Action? Molecular Therapy - Nucleic Acids, 1, e26. doi:10.1038/mtna.2012.22

Bishop, K. N., Holmes, R. K., Sheehy, A. M., & Malim, M. H. (2004). APOBEC-Mediated Editing of Viral RNA. Science, 305(5684), 645-645. doi:10.1126/science.1100658

Ter Brake, O., Konstantinova, P., Ceylan, M., & Berkhout, B. (2006). Silencing of HIV-1 with RNA Interference: a Multiple shRNA Approach. Molecular Therapy, 14(6), 883-892. doi:10.1016/j.ymthe.2006.07.007

Brodersen, P., Sakvarelidze-Achard, L., Bruun-Rasmussen, M., Dunoyer, P., Yamamoto, Y. Y., Sieburth, L., & Voinnet, O. (2008). Widespread Translational Inhibition by Plant miRNAs and siRNAs. Science, 320(5880), 1185-1190. doi:10.1126/science.1159151

Carbonell, A. (2017). Artificial small RNA-based strategies for effective and specific gene silencing in plants. Plant gene silencing: mechanisms and applications, 110-127. doi:10.1079/9781780647678.0110

Carbonell, A. (2019). Design and High-Throughput Generation of Artificial Small RNA Constructs for Plants. Plant MicroRNAs, 247-260. doi:10.1007/978-1-4939-9042-9_19

Carbonell, A. (2019). Secondary Small Interfering RNA-Based Silencing Tools in Plants: An Update. Frontiers in Plant Science, 10. doi:10.3389/fpls.2019.00687

Carbonell, A., & Daròs, J.-A. (2017). Artificial microRNAs and synthetictrans-acting small interfering RNAs interfere with viroid infection. Molecular Plant Pathology, 18(5), 746-753. doi:10.1111/mpp.12529

Carbonell, A., & Daròs, J.-A. (2019). Design, Synthesis, and Functional Analysis of Highly Specific Artificial Small RNAs with Antiviral Activity in Plants. Antiviral Resistance in Plants, 231-246. doi:10.1007/978-1-4939-9635-3_13

Carbonell, A., Takeda, A., Fahlgren, N., Johnson, S. C., Cuperus, J. T., & Carrington, J. C. (2014). New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis. Plant Physiology, 165(1), 15-29. doi:10.1104/pp.113.234989

Carbonell, A., Fahlgren, N., Mitchell, S., Cox, K. L., Reilly, K. C., Mockler, T. C., & Carrington, J. C. (2015). Highly specific gene silencing in a monocot species by artificial micro RNA s derived from chimeric mi RNA precursors. The Plant Journal, 82(6), 1061-1075. doi:10.1111/tpj.12835

Carbonell, A., López, C., & Daròs, J.-A. (2019). Fast-Forward Identification of Highly Effective Artificial Small RNAs Against Different Tomato spotted wilt virus Isolates. Molecular Plant-Microbe Interactions®, 32(2), 142-156. doi:10.1094/mpmi-05-18-0117-ta

Bhushan, K. (2018). CRISPR/Cas13a targeting of RNA virus in plants. Plant Cell Reports, 37(12), 1707-1712. doi:10.1007/s00299-018-2297-2

Chen, L., Cheng, X., Cai, J., Zhan, L., Wu, X., Liu, Q., & Wu, X. (2016). Multiple virus resistance using artificial trans-acting siRNAs. Journal of Virological Methods, 228, 16-20. doi:10.1016/j.jviromet.2015.11.004

Cullen, B. R. (2006). Role and Mechanism of Action of the APOBEC3 Family of Antiretroviral Resistance Factors. Journal of Virology, 80(3), 1067-1076. doi:10.1128/jvi.80.3.1067-1076.2006

Cuperus, J. T., Carbonell, A., Fahlgren, N., Garcia-Ruiz, H., Burke, R. T., Takeda, A., … Carrington, J. C. (2010). Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nature Structural & Molecular Biology, 17(8), 997-1003. doi:10.1038/nsmb.1866

Debreczeni, D. E., López, C., Aramburu, J., Darós, J. A., Soler, S., Galipienso, L., … Rubio, L. (2015). Complete sequence of three different biotypes of tomato spotted wilt virus (wild type, tomato Sw-5 resistance-breaking and pepper Tsw resistance-breaking) from Spain. Archives of Virology, 160(8), 2117-2123. doi:10.1007/s00705-015-2453-8

Ding, S.-W. (2010). RNA-based antiviral immunity. Nature Reviews Immunology, 10(9), 632-644. doi:10.1038/nri2824

Von Eije, K. J., Brake, O. ter, & Berkhout, B. (2008). Human Immunodeficiency Virus Type 1 Escape Is Restricted When Conserved Genome Sequences Are Targeted by RNA Interference. Journal of Virology, 82(6), 2895-2903. doi:10.1128/jvi.02035-07

Ellul, P., Garcia-Sogo, B., Pineda, B., Ríos, G., Roig, L., & Moreno, V. (2003). The ploidy level of transgenic plants in Agrobacterium-mediated transformation of tomato cotyledons (Lycopersicon esculentum L.Mill.) is genotype and procedure dependent. Theoretical and Applied Genetics, 106(2), 231-238. doi:10.1007/s00122-002-0928-y

Fahim, M., Millar, A. A., Wood, C. C., & Larkin, P. J. (2011). Resistance to Wheat streak mosaic virus generated by expression of an artificial polycistronic microRNA in wheat. Plant Biotechnology Journal, 10(2), 150-163. doi:10.1111/j.1467-7652.2011.00647.x

Fahlgren, N., & Carrington, J. C. (2009). miRNA Target Prediction in Plants. Plant MicroRNAs, 51-57. doi:10.1007/978-1-60327-005-2_4

Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., & Mello, C. C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391(6669), 806-811. doi:10.1038/35888

Gitlin, L., Stone, J. K., & Andino, R. (2005). Poliovirus Escape from RNA Interference: Short Interfering RNA-Target Recognition and Implications for Therapeutic Approaches. Journal of Virology, 79(2), 1027-1035. doi:10.1128/jvi.79.2.1027-1035.2005

Khan, M. Z., Amin, I., Hameed, A., & Mansoor, S. (2018). CRISPR–Cas13a: Prospects for Plant Virus Resistance. Trends in Biotechnology, 36(12), 1207-1210. doi:10.1016/j.tibtech.2018.05.005

Khan, M. Z., Haider, S., Mansoor, S., & Amin, I. (2019). Targeting Plant ssDNA Viruses with Engineered Miniature CRISPR-Cas14a. Trends in Biotechnology, 37(8), 800-804. doi:10.1016/j.tibtech.2019.03.015

Kis, A., Tholt, G., Ivanics, M., Várallyay, É., Jenes, B., & Havelda, Z. (2015). Polycistronic artificial miRNA-mediated resistance toWheat dwarf virusin barley is highly efficient at low temperature. Molecular Plant Pathology, 17(3), 427-437. doi:10.1111/mpp.12291

KUNG, Y.-J., LIN, S.-S., HUANG, Y.-L., CHEN, T.-C., HARISH, S. S., CHUA, N.-H., & YEH, S.-D. (2011). Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus. Molecular Plant Pathology, 13(3), 303-317. doi:10.1111/j.1364-3703.2011.00747.x

Lafforgue, G., Martinez, F., Sardanyes, J., de la Iglesia, F., Niu, Q.-W., Lin, S.-S., … Elena, S. F. (2011). Tempo and Mode of Plant RNA Virus Escape from RNA Interference-Mediated Resistance. Journal of Virology, 85(19), 9686-9695. doi:10.1128/jvi.05326-11

Lafforgue, G., Martinez, F., Niu, Q.-W., Chua, N.-H., Daros, J.-A., & Elena, S. F. (2013). Improving the Effectiveness of Artificial MicroRNA (amiR)-Mediated Resistance against Turnip Mosaic Virus by Combining Two amiRs or by Targeting Highly Conserved Viral Genomic Regions. Journal of Virology, 87(14), 8254-8256. doi:10.1128/jvi.00914-13

Levanova, A., & Poranen, M. M. (2018). RNA Interference as a Prospective Tool for the Control of Human Viral Infections. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.02151

Lin, S.-S., Wu, H.-W., Elena, S. F., Chen, K.-C., Niu, Q.-W., Yeh, S.-D., … Chua, N.-H. (2009). Molecular Evolution of a Viral Non-Coding Sequence under the Selective Pressure of amiRNA-Mediated Silencing. PLoS Pathogens, 5(2), e1000312. doi:10.1371/journal.ppat.1000312

Liu, Q., Wang, F., & Axtell, M. J. (2014). Analysis of Complementarity Requirements for Plant MicroRNA Targeting Using a Nicotiana benthamiana Quantitative Transient Assay  . The Plant Cell, 26(2), 741-753. doi:10.1105/tpc.113.120972

Llave, C., Xie, Z., Kasschau, K. D., & Carrington, J. C. (2002). Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA. Science, 297(5589), 2053-2056. doi:10.1126/science.1076311

Mahas, A., & Mahfouz, M. (2018). Engineering virus resistance via CRISPR–Cas systems. Current Opinion in Virology, 32, 1-8. doi:10.1016/j.coviro.2018.06.002

Martínez, F., Lafforgue, G., Morelli, M. J., González-Candelas, F., Chua, N.-H., Daròs, J.-A., & Elena, S. F. (2012). Ultradeep Sequencing Analysis of Population Dynamics of Virus Escape Mutants in RNAi-Mediated Resistant Plants. Molecular Biology and Evolution, 29(11), 3297-3307. doi:10.1093/molbev/mss135

Mehta, D., Stürchler, A., Anjanappa, R. B., Zaidi, S. S.-A., Hirsch-Hoffmann, M., Gruissem, W., & Vanderschuren, H. (2019). Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses. Genome Biology, 20(1). doi:10.1186/s13059-019-1678-3

Mitter, N., Zhai, Y., Bai, A. X., Chua, K., Eid, S., Constantin, M., … Pappu, H. R. (2016). Evaluation and identification of candidate genes for artificial microRNA-mediated resistance to tomato spotted wilt virus. Virus Research, 211, 151-158. doi:10.1016/j.virusres.2015.10.003

Montgomery, T. A., Howell, M. D., Cuperus, J. T., Li, D., Hansen, J. E., Alexander, A. L., … Carrington, J. C. (2008). Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation. Cell, 133(1), 128-141. doi:10.1016/j.cell.2008.02.033

Montgomery, T. A., Yoo, S. J., Fahlgren, N., Gilbert, S. D., Howell, M. D., Sullivan, C. M., … Carrington, J. C. (2008). AGO1-miR173 complex initiates phased siRNA formation in plants. Proceedings of the National Academy of Sciences, 105(51), 20055-20062. doi:10.1073/pnas.0810241105

Nishitsuji, H., Kohara, M., Kannagi, M., & Masuda, T. (2006). Effective Suppression of Human Immunodeficiency Virus Type 1 through a Combination of Short- or Long-Hairpin RNAs Targeting Essential Sequences for Retroviral Integration. Journal of Virology, 80(15), 7658-7666. doi:10.1128/jvi.00078-06

Niu, Q.-W., Lin, S.-S., Reyes, J. L., Chen, K.-C., Wu, H.-W., Yeh, S.-D., & Chua, N.-H. (2006). Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nature Biotechnology, 24(11), 1420-1428. doi:10.1038/nbt1255

Presloid, J., & Novella, I. (2015). RNA Viruses and RNAi: Quasispecies Implications for Viral Escape. Viruses, 7(6), 3226-3240. doi:10.3390/v7062768

Qu, J., Ye, J., & Fang, R. (2007). Artificial MicroRNA-Mediated Virus Resistance in Plants. Journal of Virology, 81(12), 6690-6699. doi:10.1128/jvi.02457-06

SCHOLTHOF, K.-B. G., ADKINS, S., CZOSNEK, H., PALUKAITIS, P., JACQUOT, E., HOHN, T., … FOSTER, G. D. (2011). Top 10 plant viruses in molecular plant pathology. Molecular Plant Pathology, 12(9), 938-954. doi:10.1111/j.1364-3703.2011.00752.x

Schwab, R., Palatnik, J. F., Riester, M., Schommer, C., Schmid, M., & Weigel, D. (2005). Specific Effects of MicroRNAs on the Plant Transcriptome. Developmental Cell, 8(4), 517-527. doi:10.1016/j.devcel.2005.01.018

Shah, P. S., Pham, N. P., & Schaffer, D. V. (2012). HIV Develops Indirect Cross-resistance to Combinatorial RNAi Targeting Two Distinct and Spatially Distant Sites. Molecular Therapy, 20(4), 840-848. doi:10.1038/mt.2012.3

Simón-Mateo, C., & García, J. A. (2006). MicroRNA-Guided Processing Impairs Plum Pox Virus Replication, but the Virus Readily Evolves To Escape This Silencing Mechanism. Journal of Virology, 80(5), 2429-2436. doi:10.1128/jvi.80.5.2429-2436.2006

Tashkandi, M., Ali, Z., Aljedaani, F., Shami, A., & Mahfouz, M. M. (2018). Engineering resistance against Tomato yellow leaf curl virus via the CRISPR/Cas9 system in tomato. Plant Signaling & Behavior, 13(10), e1525996. doi:10.1080/15592324.2018.1525996

Turina, M., Kormelink, R., & Resende, R. O. (2016). Resistance to Tospoviruses in Vegetable Crops: Epidemiological and Molecular Aspects. Annual Review of Phytopathology, 54(1), 347-371. doi:10.1146/annurev-phyto-080615-095843

Wang, G., Zhao, N., Berkhout, B., & Das, A. T. (2016). CRISPR-Cas9 Can Inhibit HIV-1 Replication but NHEJ Repair Facilitates Virus Escape. Molecular Therapy, 24(3), 522-526. doi:10.1038/mt.2016.24

Wang, Z., Pan, Q., Gendron, P., Zhu, W., Guo, F., Cen, S., … Liang, C. (2016). CRISPR/Cas9-Derived Mutations Both Inhibit HIV-1 Replication and Accelerate Viral Escape. Cell Reports, 15(3), 481-489. doi:10.1016/j.celrep.2016.03.042

Yoder, K. E., & Bundschuh, R. (2016). Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9. Scientific Reports, 6(1). doi:10.1038/srep29530

Zhang, Z. J. (2014). Artificial trans-acting small interfering RNA: a tool for plant biology study and crop improvements. Planta, 239(6), 1139-1146. doi:10.1007/s00425-014-2054-x

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