Food and Agriculture Organization of the United Nationshttp://www.fao.org/faostat/es/#dat
Diogo, E. L. F., Santos, J. M., & Phillips, A. J. L. (2010). Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal. Fungal Diversity, 44(1), 107-115. doi:10.1007/s13225-010-0057-x
Tuset, J. J., & Portilla, M. A. T. (1989). Taxonomic status of Fusicoccum amygdali and Phomopsis amygdalina. Canadian Journal of Botany, 67(5), 1275-1280. doi:10.1139/b89-168
[+]
Food and Agriculture Organization of the United Nationshttp://www.fao.org/faostat/es/#dat
Diogo, E. L. F., Santos, J. M., & Phillips, A. J. L. (2010). Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal. Fungal Diversity, 44(1), 107-115. doi:10.1007/s13225-010-0057-x
Tuset, J. J., & Portilla, M. A. T. (1989). Taxonomic status of Fusicoccum amygdali and Phomopsis amygdalina. Canadian Journal of Botany, 67(5), 1275-1280. doi:10.1139/b89-168
TUSET, J. J., HINAREJOS, C., & PORTILLA, M. T. (1997). Incidence of Phomopsis amygdali, Botryosphaeria berengeriana and Valsa cincta diseases in almond under different control strategies. EPPO Bulletin, 27(4), 449-454. doi:10.1111/j.1365-2338.1997.tb00664.x
Udayanga, D., Liu, X., Crous, P. W., McKenzie, E. H. C., Chukeatirote, E., & Hyde, K. D. (2012). A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis). Fungal Diversity, 56(1), 157-171. doi:10.1007/s13225-012-0190-9
Rossman, A. Y., Adams, G. C., Cannon, P. F., Castlebury, L. A., Crous, P. W., Gryzenhout, M., … Walker, D. M. (2015). Recommendations of generic names in Diaporthales competing for protection or use. IMA Fungus, 6(1), 145-154. doi:10.5598/imafungus.2015.06.01.09
Gomes, R. R., Glienke, C., Videira, S. I. R., Lombard, L., Groenewald, J. Z., & Crous, P. W. (2013). <I>Diaporthe</I>: a genus of endophytic, saprobic and plant pathogenic fungi. Persoonia - Molecular Phylogeny and Evolution of Fungi, 31(1), 1-41. doi:10.3767/003158513x666844
Gao, Y., Liu, F., Duan, W., Crous, P. W., & Cai, L. (2017). Diaporthe is paraphyletic. IMA Fungus, 8(1), 153-187. doi:10.5598/imafungus.2017.08.01.11
Dissanayake, A. (2017). The current status of species in Diaporthe. Mycosphere, 8(5), 1106-1156. doi:10.5943/mycosphere/8/5/5
Santos, L., Alves, A., & Alves, R. (2017). Evaluating multi-locus phylogenies for species boundaries determination in the genusDiaporthe. PeerJ, 5, e3120. doi:10.7717/peerj.3120
Lawrence, D. P., Travadon, R., & Baumgartner, K. (2015). Diversity of Diaporthe species associated with wood cankers of fruit and nut crops in northern California. Mycologia, 107(5), 926-940. doi:10.3852/14-353
Gramaje, D., Agustí-Brisach, C., Pérez-Sierra, A., Moralejo, E., Olmo, D., Mostert, L., … Armengol, J. (2012). Fungal trunk pathogens associated with wood decay of almond trees on Mallorca (Spain). Persoonia - Molecular Phylogeny and Evolution of Fungi, 28(1), 1-13. doi:10.3767/003158512x626155
GARDES, M., & BRUNS, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology, 2(2), 113-118. doi:10.1111/j.1365-294x.1993.tb00005.x
Travadon, R., Lawrence, D. P., Rooney-Latham, S., Gubler, W. D., Wilcox, W. F., Rolshausen, P. E., & Baumgartner, K. (2015). Cadophora species associated with wood-decay of grapevine in North America. Fungal Biology, 119(1), 53-66. doi:10.1016/j.funbio.2014.11.002
O’Donnell, K., & Cigelnik, E. (1997). Two Divergent Intragenomic rDNA ITS2 Types within a Monophyletic Lineage of the FungusFusariumAre Nonorthologous. Molecular Phylogenetics and Evolution, 7(1), 103-116. doi:10.1006/mpev.1996.0376
Glass, N. L., & Donaldson, G. C. (1995). Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology, 61(4), 1323-1330. doi:10.1128/aem.61.4.1323-1330.1995
Weir, B. S., Johnston, P. R., & Damm, U. (2012). The Colletotrichum gloeosporioides species complex. Studies in Mycology, 73, 115-180. doi:10.3114/sim0011
Udayanga, D., Castlebury, L. A., Rossman, A. Y., & Hyde, K. D. (2014). Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 32(1), 83-101. doi:10.3767/003158514x679984
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22(22), 4673-4680. doi:10.1093/nar/22.22.4673
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, 35(6), 1547-1549. doi:10.1093/molbev/msy096
Vaidya, G., Lohman, D. J., & Meier, R. (2011). SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics, 27(2), 171-180. doi:10.1111/j.1096-0031.2010.00329.x
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., … Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology, 61(3), 539-542. doi:10.1093/sysbio/sys029
Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30(9), 1312-1313. doi:10.1093/bioinformatics/btu033
Felsenstein, J. (1985). CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP. Evolution, 39(4), 783-791. doi:10.1111/j.1558-5646.1985.tb00420.x
Duthie, J. A. (1997). Models of the Response of Foliar Parasites to the Combined Effects of Temperature and Duration of Wetness. Phytopathology®, 87(11), 1088-1095. doi:10.1094/phyto.1997.87.11.1088
Agricolae: Statistical Procedures for Agricultural Research. R Package Version 1.2-3http://CRAN.R-project.org/package=agricolae
Van Niekerk, J. M., Groenewald, J. Z., Farr, D. F., Fourie, P. H., Halleen, F., & Crous, P. W. (2005). Reassessment ofPhomopsisspecies on grapevines. Australasian Plant Pathology, 34(1), 27. doi:10.1071/ap04072
Lesuthu, P., Mostert, L., Spies, C. F. J., Moyo, P., Regnier, T., & Halleen, F. (2019). Diaporthe nebulae sp. nov. and First Report of D. cynaroidis, D. novem, and D. serafiniae on Grapevines in South Africa. Plant Disease, 103(5), 808-817. doi:10.1094/pdis-03-18-0433-re
Guarnaccia, V., Groenewald, J. Z., Woodhall, J., Armengol, J., Cinelli, T., Eichmeier, A., … Crous, P. W. (2018). Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe. Persoonia - Molecular Phylogeny and Evolution of Fungi, 40(1), 135-153. doi:10.3767/persoonia.2018.40.06
Varjas, V., Vajna, L., Izsépi, F., Nagy, G., & Pájtli, É. (2017). First Report of Phomopsis amygdali Causing Twig Canker on Almond in Hungary. Plant Disease, 101(9), 1674. doi:10.1094/pdis-03-17-0365-pdn
Michailides, T. J., & Thomidis, T. (2006). First Report of Phomopsis amygdali Causing Fruit Rot on Peaches in Greece. Plant Disease, 90(12), 1551-1551. doi:10.1094/pd-90-1551c
López-Moral, A., Lovera, M., Raya, M. del C., Cortés-Cosano, N., Arquero, O., Trapero, A., & Agustí-Brisach, C. (2020). Etiology of Branch Dieback and Shoot Blight of English Walnut Caused by Botryosphaeriaceae and Diaporthe Species in Southern Spain. Plant Disease, 104(2), 533-550. doi:10.1094/pdis-03-19-0545-re
Adaskaveg, J. E., Förster, H., & Connell, J. H. (1999). First Report of Fruit Rot and Associated Branch Dieback of Almond in California Caused by a Phomopsis Species Tentatively Identified as P. amygdali. Plant Disease, 83(11), 1073-1073. doi:10.1094/pdis.1999.83.11.1073c
Farr, D. F., Castlebury, L. A., & Pardo-Schultheiss, R. A. (1999). Phomopsis amygdali causes peach shoot blight of cultivated peach trees in the southeastern United States. Mycologia, 91(6), 1008-1015. doi:10.1080/00275514.1999.12061111
Mostert, L., Crous, P. W., Kang, J.-C., & Phillips, A. J. L. (2001). Species of Phomopsis and a Libertella sp. occurring on grapevines with specific reference to South Africa: morphological, cultural, molecular and pathological characterization. Mycologia, 93(1), 146-167. doi:10.1080/00275514.2001.12061286
KANEMATSU, S., YOKOYAMA, Y., KOBAYASHI, T., KUDO, A., & OHTSU, Y. (1999). Taxonomic Reassessment of the Causal Fungus of Peach Fusicoccum Canker in Japan. Japanese Journal of Phytopathology, 65(5), 531-536. doi:10.3186/jjphytopath.65.531
Dai, F. M., Zeng, R., & Lu, J. P. (2012). First Report of Twig Canker on Peach Caused by Phomopsis amygdali in China. Plant Disease, 96(2), 288-288. doi:10.1094/pdis-04-11-0321
Bai, Q., Zhai, L., Chen, X., Hong, N., Xu, W., & Wang, G. (2015). Biological and Molecular Characterization of Five Phomopsis Species Associated with Pear Shoot Canker in China. Plant Disease, 99(12), 1704-1712. doi:10.1094/pdis-03-15-0259-re
Meng, L., Yu, C., Wang, C., & Li, G. (2018). First Report of Diaporthe amygdali Causing Walnut Twig Canker in Shandong Province of China. Plant Disease, 102(9), 1859-1859. doi:10.1094/pdis-01-18-0192-pdn
Santos, L. (2017). Diaporthe species on Rosaceae with descriptions of D. pyracanthae sp. nov. and D. malorum sp. nov. Mycosphere, 8(5), 485-511. doi:10.5943/mycosphere/8/5/1
[-]