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Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

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Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

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dc.contributor.author Mata-Nicolás, Estefanía es_ES
dc.contributor.author Montero-Pau, Javier es_ES
dc.contributor.author Gimeno -Paez, Esther es_ES
dc.contributor.author García-Carpintero, Víctor es_ES
dc.contributor.author Ziarsolo, Peio es_ES
dc.contributor.author Menda, Naama es_ES
dc.contributor.author Mueller, Lukas A. es_ES
dc.contributor.author Blanca Postigo, José Miguel es_ES
dc.contributor.author Cañizares Sales, Joaquín es_ES
dc.contributor.author van der Knaap, Esther es_ES
dc.contributor.author Díez, María José es_ES
dc.date.accessioned 2021-07-01T03:32:41Z
dc.date.available 2021-07-01T03:32:41Z
dc.date.issued 2020-05-01 es_ES
dc.identifier.uri http://hdl.handle.net/10251/168608
dc.description.abstract [EN] A collection of 163 accessions, including Solanum pimpinellifolium, Solanum lycopersicum var. cerasiforme and Solanum lycopersicum var. lycopersicum, was selected to represent the genetic and morphological variability of tomato at its centers of origin and domestication: Andean regions of Peru and Ecuador and Mesoamerica. The collection is enriched with S. lycopersicum var. cerasiforme from the Amazonian region that has not been analyzed previously nor used extensively. The collection has been morphologically characterized showing diversity for fruit, flower and vegetative traits. Their genomes were sequenced in the Varitome project and are publicly available (solgenomics.net/projects/varitome). The identified SNPs have been annotated with respect to their impact and a total number of 37,974 out of 19,364,146 SNPs have been described as high impact by the SnpEeff analysis. GWAS has shown associations for different traits, demonstrating the potential of this collection for this kind of analysis. We have not only identified known QTLs and genes, but also new regions associated with traits such as fruit color, number of flowers per inflorescence or inflorescence architecture. To speed up and facilitate the use of this information, F2 populations were constructed by crossing the whole collection with three different parents. This F2 collection is useful for testing SNPs identified by GWAs, selection sweeps or any other candidate gene. All data is available on Solanaceae Genomics Network and the accession and F2 seeds are freely available at COMAV and at TGRC genebanks. All these resources together make this collection a good candidate for genetic studies. es_ES
dc.description.sponsorship This research was supported by the National Natural Science Foundation of USA Varitome project (NSF IOS 1564366). We would like to thank the Centro de Experiencias Cajamar de Paiporta (Valencia, Spain) for its excellent work done in growing the tomato plants in their greenhouses. We thank TGRC, ARS-GRIN, and COMAV genebanks for providing seeds and to all genebanks for their titan effort to preserve biodiversity. es_ES
dc.language Inglés es_ES
dc.publisher Springer Nature es_ES
dc.relation.ispartof Horticulture Research es_ES
dc.rights Reconocimiento (by) es_ES
dc.subject.classification GENETICA es_ES
dc.title Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1038/s41438-020-0291-7 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/NSF//1564366/US/Exploitation of Genetic and Epigenetic Variation in the Regulation of Tomato Fruit Quality Traits/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario de Conservación y Mejora de la Agrodiversidad Valenciana - Institut Universitari de Conservació i Millora de l'Agrodiversitat Valenciana es_ES
dc.description.bibliographicCitation Mata-Nicolás, E.; Montero-Pau, J.; Gimeno -Paez, E.; García-Carpintero, V.; Ziarsolo, P.; Menda, N.; Mueller, LA.... (2020). Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection. Horticulture Research. 7(1):1-14. https://doi.org/10.1038/s41438-020-0291-7 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1038/s41438-020-0291-7 es_ES
dc.description.upvformatpinicio 1 es_ES
dc.description.upvformatpfin 14 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 7 es_ES
dc.description.issue 1 es_ES
dc.identifier.eissn 2052-7276 es_ES
dc.identifier.pmid 32377357 es_ES
dc.identifier.pmcid PMC7192925 es_ES
dc.relation.pasarela S\412023 es_ES
dc.contributor.funder National Science Foundation, EEUU es_ES
dc.contributor.funder UNIVERSITY OF GEORGIA RESEARCH FOUNDATION, INC. es_ES
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