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Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening

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Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening

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dc.contributor.author Zarid, Mohamed es_ES
dc.contributor.author García-Carpintero, Victor es_ES
dc.contributor.author Esteras Gómez, Cristina es_ES
dc.contributor.author Esteva, Juan es_ES
dc.contributor.author Bueso, María C. es_ES
dc.contributor.author Cañizares Sales, Joaquín es_ES
dc.contributor.author Picó Sirvent, María Belén es_ES
dc.contributor.author Monforte Gilabert, Antonio José es_ES
dc.contributor.author Fernández-Trujillo, J. Pablo es_ES
dc.date.accessioned 2021-09-04T03:41:15Z
dc.date.available 2021-09-04T03:41:15Z
dc.date.issued 2021-01-30 es_ES
dc.identifier.issn 0022-5142 es_ES
dc.identifier.uri http://hdl.handle.net/10251/171426
dc.description This is the peer reviewed version of the following article: Zarid, M., García-Carpintero, V., Esteras, C., Esteva, J., Bueso, M.C., Cañizares, J., Picó, M.B., Monforte, A.J. and Fernández-Trujillo, J.P. (2021), Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening. J Sci Food Agric, 101: 754-777, which has been published in final form at https://doi.org/10.1002/jsfa.10688. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. es_ES
dc.description.abstract [EN] BACKGROUND A near-isogenic line (NIL) of melon (SC10-2) with introgression in linkage group X was studied from harvest (at firm-ripe stage of maturity) until day 18 of postharvest storage at 20.5 degrees C together with its parental control ('Piel de Sapo', PS). RESULTS SC10-2 showed higher flesh firmness and whole fruit hardness but lower juiciness than its parental. SC10-2 showed a decrease in respiration rate accompanied by a decrease in ethylene production during ripening, both of which fell to a greater extent than in PS. The introgression affected 11 volatile organic compounds (VOCs), the levels of which during ripening were generally higher in SC10-2 than in PS. Transcriptomic analysis from RNA-Seq revealed differentially expressed genes (DEGs) associated with the effects studied. For example, 909 DEGs were exclusive to the introgression, and only 23 DEGs were exclusive to postharvest ripening time. Major functions of the DEGs associated with introgression or ripening time were identified by cluster analysis. About 37 genes directly and/or indirectly affected the delay in ripening of SC10-2 compared with PS in general and, more particularly, the physiological and quality traits measured and, probably, the differential non-climacteric response. Of the former genes, we studied in more detail at least five that mapped in the introgression in linkage group (LG) X, and 32 outside it. CONCLUSION There is an apparent control of textural changes, VOCs and fruit ripening by an expression quantitative trait locus located in LG X together with a direct control on them due to genes presented in the introgression (CmTrpD,CmNADH1,CmTCP15,CmGDSL esterase/lipase, andCmHK4-like) and CmNAC18. es_ES
dc.description.sponsorship This work was funded by grants 11784/PI/09 (Seneca Foundation, Region of Murcia) and Ministry of Economy and Innovation (AGL2010-20858). M Zarid acknowledges an UE-Erasmus predoctoral fellowship, a program coordinated by the University of Murcia in the framework of CMN. Thanks are due to Semillas Fitó SA (Barcelona, Spain), for providing seeds of PS melons and IRTACRAG for the seeds of SC10-2. We acknowledge the assistance of P Varó and his team in CIFEA-Torre Pacheco for crop management, to N Dos-Santos, M Medina, M García-Gutiérrez, A Hakmaoui, E Cuadros, I Canales and AA Escudero (UPCT) for sampling and technical assistance, to SAIT-UPCT for GC-MS analysis, to AG Sifres (COMAV) for RNA extraction, and to CNAG (Barcelona) for professional assistance in RNA-Seq. The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. es_ES
dc.language Inglés es_ES
dc.publisher John Wiley & Sons es_ES
dc.relation.ispartof Journal of the Science of Food and Agriculture es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Cucumis melo L. es_ES
dc.subject Fruit quality traits es_ES
dc.subject Postharvest quality es_ES
dc.subject Fruit senescence es_ES
dc.subject RNA-seq es_ES
dc.subject Texture es_ES
dc.subject.classification GENETICA es_ES
dc.title Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1002/jsfa.10688 es_ES
dc.relation.projectID info:eu-repo/grantAgreement/f SéNeCa//11784%2FPI%2F09/ES/Análisis del efecto de QTLs que inducen cambios en la textura de la pulpa y la calidad global del fruto de melón/ es_ES
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//AGL2010-20858/ES/CALIDAD AROMATICA DEL MELON Y SU RELACION CON PRECURSORES Y EL COMPORTAMIENTO FISIOLOGICO DEL FRUTO/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Zarid, M.; García-Carpintero, V.; Esteras Gómez, C.; Esteva, J.; Bueso, MC.; Cañizares Sales, J.; Picó Sirvent, MB.... (2021). Transcriptomic analysis of a near-isogenic line of melon with high fruit flesh firmness during ripening. Journal of the Science of Food and Agriculture. 101(2):754-777. https://doi.org/10.1002/jsfa.10688 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion https://doi.org/10.1002/jsfa.10688 es_ES
dc.description.upvformatpinicio 754 es_ES
dc.description.upvformatpfin 777 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 101 es_ES
dc.description.issue 2 es_ES
dc.identifier.pmid 32713003 es_ES
dc.relation.pasarela S\416223 es_ES
dc.contributor.funder Ministerio de Ciencia e Innovación es_ES
dc.contributor.funder Fundación Séneca-Agencia de Ciencia y Tecnología de la Región de Murcia es_ES
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dc.subject.ods 02.- Poner fin al hambre, conseguir la seguridad alimentaria y una mejor nutrición, y promover la agricultura sostenible es_ES


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