- -

Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

  • Estadisticas de Uso

Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae

Show full item record

Nohales Zafra, MA.; Molina Serrano, D.; Flores Pedauye, R.; Daros Arnau, JA. (2012). Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae. Journal of Virology. 86:8269-8276. https://doi.org/10.1128/JVI.00629-12

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/34533

Files in this item

Item Metadata

Title: Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae
Author: Nohales Zafra, Maria Angeles Molina Serrano, Diego Flores Pedauye, Ricardo Daros Arnau, Jose Antonio
UPV Unit: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Issued date:
Abstract:
Avocado sunblotch viroid, peach latent mosaic viroid, chrysanthemum chlorotic mottle viroid, and eggplant latent viroid (ELVd), the four recognized members of the family Avsunviroidae, replicate through the symmetric pathway ...[+]
Subjects: Hammerhead ribozyme , Self-cleavage , In-vivo , Wheat-germ , Host interactions , Ligation , Virus , Vitro , Plus , Transcripts
Copyrigths: Reserva de todos los derechos
Source:
Journal of Virology. (issn: 0022-538X )
DOI: 10.1128/JVI.00629-12
Publisher:
American Society for Microbiology
Publisher version: http://dx.doi.org/10.1128/JVI.00629-12
Project ID:
info:eu-repo/grantAgreement/MICINN//BIO2008-01986/ES/INTERACCIONES RNA-PROTEINA EN EL CICLO INFECCIOSO DE PATOGENOS DE RNA DE PLANTAS/
info:eu-repo/grantAgreement/MICINN//BIO2011-26741/ES/PATOGENOS DE RNA DE PLANTAS: INTERACCION CON EL HUESPED Y DESARROLLO DE HERRAMIENTAS BIOTECNOLOGICAS/
info:eu-repo/grantAgreement/MICINN//BFU2008-03154/ES/INTERACCIONES VIROIDE-HUESPED: PAPEL DE LAS RIBOZIMAS, DEL SILENCIAMIENTO MEDIADO POR RNA, Y DE LA RECOMBINACION DE RNA/
Thanks:
This work was supported by the Ministerio de Ciencia e Innovacion (MICINN) from Spain through grants BIO2008-01986, BIO2011-26741, and BFU2008-03154. M. A. Nohales and D. Molina-Serrano were the recipients of predoctoral ...[+]
Type: Artículo

References

Abelson, J., Trotta, C. R., & Li, H. (1998). tRNA Splicing. Journal of Biological Chemistry, 273(21), 12685-12688. doi:10.1074/jbc.273.21.12685

Branch, A. D., Benenfeld, B. J., & Robertson, H. D. (1988). Evidence for a single rolling circle in the replication of potato spindle tuber viroid. Proceedings of the National Academy of Sciences, 85(23), 9128-9132. doi:10.1073/pnas.85.23.9128

Branch, A., & Robertson, H. (1984). A replication cycle for viroids and other small infectious RNA’s. Science, 223(4635), 450-455. doi:10.1126/science.6197756 [+]
Abelson, J., Trotta, C. R., & Li, H. (1998). tRNA Splicing. Journal of Biological Chemistry, 273(21), 12685-12688. doi:10.1074/jbc.273.21.12685

Branch, A. D., Benenfeld, B. J., & Robertson, H. D. (1988). Evidence for a single rolling circle in the replication of potato spindle tuber viroid. Proceedings of the National Academy of Sciences, 85(23), 9128-9132. doi:10.1073/pnas.85.23.9128

Branch, A., & Robertson, H. (1984). A replication cycle for viroids and other small infectious RNA’s. Science, 223(4635), 450-455. doi:10.1126/science.6197756

Canny, M. D., Jucker, F. M., & Pardi, A. (2007). Efficient Ligation of theSchistosomaHammerhead Ribozyme†. Biochemistry, 46(12), 3826-3834. doi:10.1021/bi062077r

Cote, F., Levesque, D., & Perreault, J.-P. (2001). Natural 2’,5’-Phosphodiester Bonds Found at the Ligation Sites of Peach Latent Mosaic Viroid. Journal of Virology, 75(1), 19-25. doi:10.1128/jvi.75.1.19-25.2001

Côté, F., & Perreault, J.-P. (1997). Peach latent mosaic viroid is locked by a 2′,5′-phosphodiester bond produced by in vitro self-ligation 1 1Edited by D. E. Draper. Journal of Molecular Biology, 273(3), 533-543. doi:10.1006/jmbi.1997.1355

Daros, J.-A. (2002). A chloroplast protein binds a viroid RNA in vivo and facilitates its hammerhead-mediated self-cleavage. The EMBO Journal, 21(4), 749-759. doi:10.1093/emboj/21.4.749

Daros, J. A., Marcos, J. F., Hernandez, C., & Flores, R. (1994). Replication of avocado sunblotch viroid: evidence for a symmetric pathway with two rolling circles and hammerhead ribozyme processing. Proceedings of the National Academy of Sciences, 91(26), 12813-12817. doi:10.1073/pnas.91.26.12813

De la Pena, M. (2003). Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity. The EMBO Journal, 22(20), 5561-5570. doi:10.1093/emboj/cdg530

De la Pena, M., Navarro, B., & Flores, R. (1999). Mapping the molecular determinant of pathogenicity in a hammerhead viroid: A tetraloop within the in vivo branched RNA conformation. Proceedings of the National Academy of Sciences, 96(17), 9960-9965. doi:10.1073/pnas.96.17.9960

Ding, B. (2009). The Biology of Viroid-Host Interactions. Annual Review of Phytopathology, 47(1), 105-131. doi:10.1146/annurev-phyto-080508-081927

Englert, M. (2005). Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins. Nucleic Acids Research, 33(1), 388-399. doi:10.1093/nar/gki174

Englert, M., Latz, A., Becker, D., Gimple, O., Beier, H., & Akama, K. (2007). Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments. Biochimie, 89(11), 1351-1365. doi:10.1016/j.biochi.2007.06.014

Fadda, Z., Daros, J. A., Fagoaga, C., Flores, R., & Duran-Vila, N. (2003). Eggplant Latent Viroid, the Candidate Type Species for a New Genus within the Family Avsunviroidae (Hammerhead Viroids). Journal of Virology, 77(11), 6528-6532. doi:10.1128/jvi.77.11.6528-6532.2003

Feldstein, P. A., Hu, Y., & Owens, R. A. (1998). Precisely full length, circularizable, complementary RNA: An infectious form of potato spindle tuber viroid. Proceedings of the National Academy of Sciences, 95(11), 6560-6565. doi:10.1073/pnas.95.11.6560

Flores, R., Daròs, J.-A., & Hernández, C. (2000). Avsunviroidae family: Viroids containing hammerhead ribozymes. Advances in Virus Research, 271-323. doi:10.1016/s0065-3527(00)55006-4

Flores, R., Hernández, C., Alba, A. E. M. de, Daròs, J.-A., & Serio, F. D. (2005). Viroids and Viroid-Host Interactions. Annual Review of Phytopathology, 43(1), 117-139. doi:10.1146/annurev.phyto.43.040204.140243

Flores, R., & Owens, R. A. (2008). Viroids. Encyclopedia of Virology, 332-342. doi:10.1016/b978-012374410-4.00532-x

Gas, M.-E., Hernández, C., Flores, R., & Daròs, J.-A. (2007). Processing of Nuclear Viroids In Vivo: An Interplay between RNA Conformations. PLoS Pathogens, 3(11), e182. doi:10.1371/journal.ppat.0030182

Gas, M.-E., Molina-Serrano, D., Hernandez, C., Flores, R., & Daros, J.-A. (2008). Monomeric Linear RNA of Citrus Exocortis Viroid Resulting from Processing In Vivo Has 5’-Phosphomonoester and 3’-Hydroxyl Termini: Implications for the RNase and RNA Ligase Involved in Replication. Journal of Virology, 82(20), 10321-10325. doi:10.1128/jvi.01229-08

Gómez, G., & Pallás, V. (2010). Noncoding RNA Mediated Traffic of Foreign mRNA into Chloroplasts Reveals a Novel Signaling Mechanism in Plants. PLoS ONE, 5(8), e12269. doi:10.1371/journal.pone.0012269

Hernandez, C., & Flores, R. (1992). Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structures. Proceedings of the National Academy of Sciences, 89(9), 3711-3715. doi:10.1073/pnas.89.9.3711

Hertel, K. J., Herschlag, D., & Uhlenbeck, O. C. (1994). A Kinetic and Thermodynamic Framework for the Hammerhead Ribozyme Reaction. Biochemistry, 33(11), 3374-3385. doi:10.1021/bi00177a031

Hutchins, C. J., Keese, P., Visvader, J. E., Rathjen, P. D., McInnes, J. L., & Symons, R. H. (1985). Comparison of multimeric plus and minus forms of viroids and virusoids. Plant Molecular Biology, 4(5), 293-304. doi:10.1007/bf02418248

Hutchins, C. J., Rathjen, P. D., Forster, A. C., & Symons, R. H. (1986). Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid. Nucleic Acids Research, 14(9), 3627-3640. doi:10.1093/nar/14.9.3627

Khvorova, A., Lescoute, A., Westhof, E., & Jayasena, S. D. (2003). Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nature Structural & Molecular Biology, 10(9), 708-712. doi:10.1038/nsb959

Kiberstis, P. A., Haseloff, J., & Zimmern, D. (1985). 2′ phosphomonoester, 3′-5′ phosphodiester bond at a unique site in a circular viral RNA. The EMBO Journal, 4(3), 817-822. doi:10.1002/j.1460-2075.1985.tb03703.x

Konarska, M., Filipowicz, W., Domdey, H., & Gross, H. J. (1981). Formation of a 2′-phosphomonoester, 3′,5′-phosphodiester linkage by a novel RNA ligase in wheat germ. Nature, 293(5828), 112-116. doi:10.1038/293112a0

Liu, Y., Schiff, M., Marathe, R., & Dinesh-Kumar, S. P. (2002). Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. The Plant Journal, 30(4), 415-429. doi:10.1046/j.1365-313x.2002.01297.x

Makino, S., Sawasaki, T., Endo, Y., & Takai, K. (2005). Purification and sequence determination of an RNA ligase from wheat embryos. Nucleic Acids Symposium Series, 49(1), 319-320. doi:10.1093/nass/49.1.319

Marcos, J. F., & Flores, R. (1993). The 5’ end Generated in the in vitro Self-Cleavage Reaction of Avocado Sunblotch Viroid RNAs is Present in Naturally Occurring Linear Viroid Molecules. Journal of General Virology, 74(5), 907-910. doi:10.1099/0022-1317-74-5-907

Martinez, F., Marques, J., Salvador, M. L., & Daros, J.-A. (2009). Mutational analysis of eggplant latent viroid RNA processing in Chlamydomonas reinhardtii chloroplast. Journal of General Virology, 90(12), 3057-3065. doi:10.1099/vir.0.013425-0

Molina-Serrano, D., Marqués, J., Nohales, M.-Á., Flores, R., & Daròs, J.-A. (2012). A chloroplastic RNA ligase activity analogous to the bacterial and archaeal 2´–5′ RNA ligase. RNA Biology, 9(3), 326-333. doi:10.4161/rna.19218

Navarro, B., & Flores, R. (1997). Chrysanthemum chlorotic mottle viroid: Unusual structural properties of a subgroup of self-cleaving viroids with hammerhead ribozymes. Proceedings of the National Academy of Sciences, 94(21), 11262-11267. doi:10.1073/pnas.94.21.11262

Navarro, J.-A., Daròs, J.-A., & Flores, R. (1999). Complexes Containing Both Polarity Strands of Avocado Sunblotch Viroid: Identification in Chloroplasts and Characterization. Virology, 253(1), 77-85. doi:10.1006/viro.1998.9497

Navarro, J.-A., Vera, A., & Flores, R. (2000). A Chloroplastic RNA Polymerase Resistant to Tagetitoxin Is Involved in Replication of Avocado Sunblotch Viroid. Virology, 268(1), 218-225. doi:10.1006/viro.1999.0161

Nelson, J. A., Shepotinovskaya, I., & Uhlenbeck, O. C. (2005). Hammerheads Derived from sTRSV Show Enhanced Cleavage and Ligation Rate Constants†. Biochemistry, 44(44), 14577-14585. doi:10.1021/bi051130t

PRODY, G. A., BAKOS, J. T., BUZAYAN, J. M., SCHNEIDER, I. R., & BRUENING, G. (1986). Autolytic Processing of Dimeric Plant Virus Satellite RNA. Science, 231(4745), 1577-1580. doi:10.1126/science.231.4745.1577

Rodio, M.-E., Delgado, S., De Stradis, A., Gómez, M.-D., Flores, R., & Di Serio, F. (2007). A Viroid RNA with a Specific Structural Motif Inhibits Chloroplast Development. The Plant Cell, 19(11), 3610-3626. doi:10.1105/tpc.106.049775

Ruiz, M. T., Voinnet, O., & Baulcombe, D. C. (1998). Initiation and Maintenance of Virus-Induced Gene Silencing. The Plant Cell, 10(6), 937-946. doi:10.1105/tpc.10.6.937

Schurer, H. (2002). A universal method to produce in vitro transcripts with homogeneous 3’ ends. Nucleic Acids Research, 30(12), 56e-56. doi:10.1093/nar/gnf055

Tsagris, E. M., Martínez de Alba, Á. E., Gozmanova, M., & Kalantidis, K. (2008). Viroids. Cellular Microbiology, 10(11), 2168-2179. doi:10.1111/j.1462-5822.2008.01231.x

WANG, L. K. (2005). Structure-function analysis of yeast tRNA ligase. RNA, 11(6), 966-975. doi:10.1261/rna.2170305

[-]

recommendations

 

This item appears in the following Collection(s)

Show full item record