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Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform

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Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform

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Salavert Torres, J.; Blanquer Espert, I.; Tomás Domínguez, AE.; Hernández García, V.; Medina Castelló, I.; Tárraga Giménez, J.; Dopazo Blazquez, J. (2012). Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 9(4):1245-1256. doi:10.1109/TCBB.2012.49

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/35694

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Title: Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform
Author:
UPV Unit: Universitat Politècnica de València. Instituto de Instrumentación para Imagen Molecular - Institut d'Instrumentació per a Imatge Molecular
Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació
Issued date:
Abstract:
General Purpose Graphic Processing Units (GPGPUs) constitute an inexpensive resource for computing-intensive applications that could exploit an intrinsic fine-grain parallelism. This paper presents the design and ...[+]
Subjects: Burrows-Wheeler Transform , CUDA , GPU , Short-read alignment
Copyrigths: Cerrado
Source:
IEEE/ACM Transactions on Computational Biology and Bioinformatics. (issn: 1545-5963 ) (eissn: 1557-9964 )
DOI: 10.1109/TCBB.2012.49
Publisher:
Association for Computing Machinery (ACM)
Institute of Electrical and Electronics Engineers (IEEE)
Publisher version: http://dx.doi.org/10.1109/TCBB.2012.49
Thanks:
The authors would like to thank the Universitat Politecnica de Valencia in the frame of the grant "High-performance tools for the alignment of genetic sequences using graphic accelerators/Herramientas de altas prestaciones ...[+]
Type: Artículo

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