- -

Development and application of new molecular markers for analysis of genetic diversity in Verticillium dahliae populations

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

Development and application of new molecular markers for analysis of genetic diversity in Verticillium dahliae populations

Show full item record

Berbegal Martinez, M.; Garzón, CD.; Ortega, A.; Armengol Fortí, J.; Jiménez Díaz, RM.; Jiménez Gasco, MDM. (2011). Development and application of new molecular markers for analysis of genetic diversity in Verticillium dahliae populations. Plant Pathology. 60(5):866-877. doi:10.1111/j.1365-3059.2011.02432.x

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/62066

Files in this item

Item Metadata

Title: Development and application of new molecular markers for analysis of genetic diversity in Verticillium dahliae populations
Author: Berbegal Martínez, Mónica Garzón, C. D. Ortega, A. Armengol Fortí, Josep Jiménez Díaz, R. M. Jiménez Gasco, María del Mar
UPV Unit: Universitat Politècnica de València. Departamento de Ecosistemas Agroforestales - Departament d'Ecosistemes Agroforestals
Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani
Issued date:
Abstract:
The aim of this study was to develop new polymorphic markers for analysis of genetic diversity in the fungal soilborne plant pathogen Verticillium dahliae. Twelve polymorphic markers (five microsatellites and seven polymorphic ...[+]
Subjects: Fungal ecology , Host adaptation , Molecular markers , SSRs , Verticillium wilt , Allele , Assessment method , Crop rotation , Data set , Electrokinesis , Fungus , Gel , Genetic differentiation , Genetic marker , Genomics , Geographical region , Host plant , Molecular analysis , Polymerase chain reaction , Polymorphism , Population structure , Potato , Resolution , Spain , Cynara scolymus , Fungi , Solanum tuberosum , Verticillium dahliae
Copyrigths: Cerrado
Source:
Plant Pathology. (issn: 0032-0862 )
DOI: 10.1111/j.1365-3059.2011.02432.x
Publisher:
Wiley
Publisher version: http://dx.doi.org/10.1111/j.1365-3059.2011.02432.x
Project ID:
MEC/AP2002-3818
Thanks:
MB was a recipient of a FPU fellowship from the Ministry of Education and Science of Spain (AP2002-3818); we thank Jeniffer Yanez and Rachel Leonard for very valuable technical support and D. Davis for providing the V. ...[+]
Type: Artículo

References

Agapow, P.-M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1(1-2), 101-102. doi:10.1046/j.1471-8278.2000.00014.x

Balloux, F., & Lugon-Moulin, N. (2002). The estimation of population differentiation with microsatellite markers. Molecular Ecology, 11(2), 155-165. doi:10.1046/j.0962-1083.2001.01436.x

Barbara, D. J., & Clewes, E. (2003). Plant pathogenic Verticillium species: how many of them are there? Molecular Plant Pathology, 4(4), 297-305. doi:10.1046/j.1364-3703.2003.00172.x [+]
Agapow, P.-M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1(1-2), 101-102. doi:10.1046/j.1471-8278.2000.00014.x

Balloux, F., & Lugon-Moulin, N. (2002). The estimation of population differentiation with microsatellite markers. Molecular Ecology, 11(2), 155-165. doi:10.1046/j.0962-1083.2001.01436.x

Barbara, D. J., & Clewes, E. (2003). Plant pathogenic Verticillium species: how many of them are there? Molecular Plant Pathology, 4(4), 297-305. doi:10.1046/j.1364-3703.2003.00172.x

BARBARA, D. J., MORTON, A., & MILLER, N. J. (2005). Isolation of microsatellite markers from an interspecific hybrid isolate of the fungal plant pathogen Verticillium dahliae. Molecular Ecology Notes, 5(4), 854-856. doi:10.1111/j.1471-8286.2005.01087.x

Berbegal, M., Ortega, A., García-Jiménez, J., & Armengol, J. (2007). Inoculum Density-Disease Development Relationship in Verticillium Wilt of Artichoke Caused byVerticillium dahliae. Plant Disease, 91(9), 1131-1136. doi:10.1094/pdis-91-9-1131

Berbegal, M., Ortega, A., Jiménez-Gasco, M. M., Olivares-García, C., Jiménez-Díaz, R. M., & Armengol, J. (2010). Genetic Diversity and Host Range of Verticillium dahliae Isolates from Artichoke and Other Vegetable Crops in Spain. Plant Disease, 94(4), 396-404. doi:10.1094/pdis-94-4-0396

Bhat, R. G., & Subbarao, K. V. (1999). Host Range Specificity inVerticillium dahliae. Phytopathology, 89(12), 1218-1225. doi:10.1094/phyto.1999.89.12.1218

Bhat, R. G., Smith, R. F., Koike, S. T., Wu, B. M., & Subbarao, K. V. (2003). Characterization of Verticillium dahliae Isolates and Wilt Epidemics of Pepper. Plant Disease, 87(7), 789-797. doi:10.1094/pdis.2003.87.7.789

Castelo, A. T., Martins, W., & Gao, G. R. (2002). TROLL--Tandem Repeat Occurrence Locator. Bioinformatics, 18(4), 634-636. doi:10.1093/bioinformatics/18.4.634

Collado-Romero, M., Mercado-Blanco, J., Olivares-García, C., Valverde-Corredor, A., & Jiménez-Díaz, R. M. (2006). Molecular Variability Within and AmongVerticillium dahliaeVegetative Compatibility Groups Determined by Fluorescent Amplified Fragment Length Polymorphism and Polymerase Chain Reaction Markers. Phytopathology, 96(5), 485-495. doi:10.1094/phyto-96-0485

Collado-Romero, M., Mercado-Blanco, J., Olivares-García, C., & Jiménez-Díaz, R. M. (2008). Phylogenetic Analysis of Verticillium dahliae Vegetative Compatibility Groups. Phytopathology, 98(9), 1019-1028. doi:10.1094/phyto-98-9-1019

Collado-Romero, M., Berbegal, M., Jiménez-Díaz, R. M., Armengol, J., & Mercado-Blanco, J. (2009). A PCR-based ‘molecular tool box’ forin plantadifferential detection ofVerticillium dahliaevegetative compatibility groups infecting artichoke. Plant Pathology, 58(3), 515-526. doi:10.1111/j.1365-3059.2008.01981.x

Collins, A., Mercado-Blanco, J., Jimenez-Diaz, R. M., Olivares, C., Clewes, E., & Barbara, D. J. (2005). Correlation of molecular markers and biological properties in Verticillium dahliae and the possible origins of some isolates. Plant Pathology, 54(4), 549-557. doi:10.1111/j.1365-3059.2005.01240.x

Cooke, D. E. L., & Lees, A. K. (2004). Markers, old and new, for examining Phytophthora infestans diversity. Plant Pathology, 53(6), 692-704. doi:10.1111/j.1365-3059.2004.01104.x

Daayf, F., Nicole, M., & Geiger, J.-P. (1995). Differentiation ofVerticillium dahliae populations on the basis of vegetative compatibility and pathogenicity on cotton. European Journal of Plant Pathology, 101(1), 69-79. doi:10.1007/bf01876095

Dobinson, K. F., Harrington, M. A., Omer, M., & Rowe, R. C. (2000). Molecular Characterization of Vegetative Compatibility Group 4A and 4B Isolates of Verticillium dahliae Associated with Potato Early Dying. Plant Disease, 84(11), 1241-1245. doi:10.1094/pdis.2000.84.11.1241

Dung, J. K. S., Schroeder, B. K., & Johnson, D. A. (2010). Evaluation of Verticillium Wilt Resistance inMentha arvensisandM. longifoliaGenotypes. Plant Disease, 94(10), 1255-1260. doi:10.1094/pdis-01-10-0062

Dutech, C., Enjalbert, J., Fournier, E., Delmotte, F., Barrès, B., Carlier, J., … Giraud, T. (2007). Challenges of microsatellite isolation in fungi. Fungal Genetics and Biology, 44(10), 933-949. doi:10.1016/j.fgb.2007.05.003

Glenn, T. C., & Schable, N. A. (2005). Isolating Microsatellite DNA Loci. Molecular Evolution: Producing the Biochemical Data, 202-222. doi:10.1016/s0076-6879(05)95013-1

Gobbin, D., Pertot, I., & Gessler, C. (2003). European Journal of Plant Pathology, 109(2), 153-164. doi:10.1023/a:1022565405974

Jiménez-Díaz, R. M., Mercado-Blanco, J., Olivares-García, C., Collado-Romero, M., Bejarano-Alcázar, J., Rodríguez-Jurado, D., … Armengol, J. (2006). Genetic and Virulence Diversity inVerticillium dahliaePopulations Infecting Artichoke in Eastern-Central Spain. Phytopathology, 96(3), 288-298. doi:10.1094/phyto-96-0288

Joaquim, T. R. (1990). Reassessment of Vegetative Compatibility Relationships Among Strains ofVerticillium dahliaeUsing Nitrate-Nonutilizing Mutants. Phytopathology, 80(11), 1160. doi:10.1094/phyto-80-1160

Kawecki, T. J., & Ebert, D. (2004). Conceptual issues in local adaptation. Ecology Letters, 7(12), 1225-1241. doi:10.1111/j.1461-0248.2004.00684.x

Korolev, N., Katan, J., & Katan, T. (2000). Vegetative Compatibility Groups of Verticillium dahliae in Israel: Their Distribution and Association with Pathogenicity. Phytopathology, 90(5), 529-536. doi:10.1094/phyto.2000.90.5.529

Korolev, N., Pérez-Artés, E., Bejarano-Alcázar, J., Rodríguez-Jurado, D., Katan, J., Katan, T., & Jiménez-Díaz, R. M. (2001). European Journal of Plant Pathology, 107(4), 443-456. doi:10.1023/a:1011212426447

Mercado-Blanco, J., Rodríguez-Jurado, D., Pérez-Artés, E., & Jiménez-Díaz, R. M. (2001). Detection of the nondefoliating pathotype ofVerticillium dahliaein infected olive plants by nested PCR. Plant Pathology, 50(5), 609-619. doi:10.1046/j.1365-3059.2001.00601.x

Mercado-Blanco, J., Rodríguez-Jurado, D., Pérez-Artés, E., & Jiménez-Díaz, R. M. (2002). European Journal of Plant Pathology, 108(1), 1-13. doi:10.1023/a:1013994827836

Mercado-Blanco, J., Rodríguez-Jurado, D., Parrilla-Araujo, S., & Jiménez-Díaz, R. M. (2003). Simultaneous Detection of the Defoliating and NondefoliatingVerticillium dahliaePathotypes in Infected Olive Plants by Duplex, Nested Polymerase Chain Reaction. Plant Disease, 87(12), 1487-1494. doi:10.1094/pdis.2003.87.12.1487

Milgroom, M. G. (1996). RECOMBINATION AND THE MULTILOCUS STRUCTURE OF FUNGAL POPULATIONS. Annual Review of Phytopathology, 34(1), 457-477. doi:10.1146/annurev.phyto.34.1.457

Milgroom, M. G., & Peever, T. L. (2003). Population Biology of Plant Pathogens: The Synthesis of Plant Disease Epidemiology and Population Genetics. Plant Disease, 87(6), 608-617. doi:10.1094/pdis.2003.87.6.608

Nei, M. (1973). Analysis of Gene Diversity in Subdivided Populations. Proceedings of the National Academy of Sciences, 70(12), 3321-3323. doi:10.1073/pnas.70.12.3321

Nei, M. (1987). Molecular Evolutionary Genetics. doi:10.7312/nei-92038

OKOLI, C. A. N., CARDER, J. H., & BARBARA, D. J. (1994). Restriction fragment length polymorphisms (RFLPs) and the relationships of some host-adapted isolates of Verticillium dahliae. Plant Pathology, 43(1), 33-40. doi:10.1111/j.1365-3059.1994.tb00550.x

Omer, M. A., Johnson, D. A., Douhan, L. I., Hamm, P. B., & Rowe, R. C. (2008). Detection, Quantification, and Vegetative Compatibility of Verticillium dahliae in Potato and Mint Production Soils in the Columbia Basin of Oregon and Washington. Plant Disease, 92(7), 1127-1131. doi:10.1094/pdis-92-7-1127

Ortega, A., & Pérez, S. (2007). AGGRESSIVENESS OF VERTICILLIUM DAHLIAE ISOLATES FROM POTATO TO ARTICHOKE. Acta Horticulturae, (730), 407-412. doi:10.17660/actahortic.2007.730.53

Orti, G., Pearse, D. E., & Avise, J. C. (1997). Phylogenetic assessment of length variation at a microsatellite locus. Proceedings of the National Academy of Sciences, 94(20), 10745-10749. doi:10.1073/pnas.94.20.10745

Pegg, G. F., & Brady, B. L. (Eds.). (2002). Verticillium wilts. doi:10.1079/9780851995298.0000

Rowe, R. C. (1995). Recent progress in understanding relationships betweenVerticillium species and subspecific groups. Phytoparasitica, 23(1), 31-38. doi:10.1007/bf02980394

Rowe, R. C., & Powelson, M. L. (2002). Potato Early Dying: Management Challenges in a Changing Production Environment. Plant Disease, 86(11), 1184-1193. doi:10.1094/pdis.2002.86.11.1184

Slatkin, M. (1987). Gene flow and the geographic structure of natural populations. Science, 236(4803), 787-792. doi:10.1126/science.3576198

Strausbaugh, C. A. (1992). Assessment of Vegetative Compatibility ofVerticillium dahliaeTester Strains and Isolates from California Potatoes. Phytopathology, 82(1), 61. doi:10.1094/phyto-82-61

Talboys, P. W. (1960). A CULTURE-MEDIUM AIDING THE IDENTIFICATION OF VERTICILLIUM ALBO-ATRUM AND V. DAHLIAE. Plant Pathology, 9(2), 57-58. doi:10.1111/j.1365-3059.1960.tb01147.x

Taylor, J., Jacobson, D., & Fisher, M. (1999). THEEVOLUTION OFASEXUALFUNGI: Reproduction, Speciation and Classification. Annual Review of Phytopathology, 37(1), 197-246. doi:10.1146/annurev.phyto.37.1.197

Ureña-Padilla, A. R., MacKenzie, S. J., Bowen, B. W., & Legard, D. E. (2002). Etiology and Population Genetics ofColletotrichumspp. Causing Crown and Fruit Rot of Strawberry. Phytopathology, 92(11), 1245-1252. doi:10.1094/phyto.2002.92.11.1245

Zeise, K., & von Tiedemann, A. (2002). Application of RAPD-PCR for Virulence Type Analysis within Verticillium dahliae and V. longisporum. Journal of Phytopathology, 150(10), 557-563. doi:10.1046/j.1439-0434.2002.00799.x

[-]

recommendations

 

This item appears in the following Collection(s)

Show full item record