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Highly sensitive and ultrafast read mapping for RNA-seq analysis

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Highly sensitive and ultrafast read mapping for RNA-seq analysis

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Medina, I.; Tárraga, J.; Martínez, H.; Barrachina, S.; Castillo, MI.; Paschall, J.; Salavert Torres, J.... (2016). Highly sensitive and ultrafast read mapping for RNA-seq analysis. DNA Research. 1(1):1-8. https://doi.org/10.1093/dnares/dsv039

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Título: Highly sensitive and ultrafast read mapping for RNA-seq analysis
Autor: Medina, I. Tárraga, J. Martínez, H, Barrachina, S. Castillo, M. I. Paschall, J. Salavert Torres, José Blanquer Espert, Ignacio Hernández García, Vicente Quintana Ortí, Enrique Salvador Dopazo, J.
Entidad UPV: Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació
Universitat Politècnica de València. Departamento de Informática de Sistemas y Computadores - Departament d'Informàtica de Sistemes i Computadors
Universitat Politècnica de València. Instituto de Instrumentación para Imagen Molecular - Institut d'Instrumentació per a Imatge Molecular
Fecha difusión:
Resumen:
As sequencing technologies progress, the amount of data produced grows exponentially, shifting the bottleneck of discovery towards the data analysis phase. In particular, currently available mapping solutions for RNA-seq ...[+]
Palabras clave: RNA-seq , Mapping , Burrows-Wheeler Transform , High-performance computing
Derechos de uso: Reconocimiento - No comercial (by-nc)
Fuente:
DNA Research. (issn: 1340-2838 )
DOI: 10.1093/dnares/dsv039
Editorial:
Oxford University Press
Versión del editor: http://dx.doi.org/ 10.1093/dnares/dsv039
Código del Proyecto:
info:eu-repo/grantAgreement/MINECO//BIO2014-57291-R/ES/NUEVAS ESTRATEGIAS PARA EL DESCUBRIMIENTO DE DIANAS MOLECULARES Y DISEÑO DE NUEVAS APROXIMACIONES TERAPEUTICAS CONTRA EL CANCER Y OTRAS ENFERMEDADES BASADAS EN BIOLOGIA DE SIS/
info:eu-repo/grantAgreement/MAEC//D%2F016099%2F08/ES/ACCION PARA EL FORTALECIMIENTO CIENTÍFICO TECNOLÓGICO EN ÁREAS RELACIONADAS CON LA GENÓMICA Y BIOINFORMÁTICA APLICADAS A LOS SISTEMAS AGROPECUARIOS/
info:eu-repo/grantAgreement/GVA//PROMETEOII%2F2014%2F025/
Agradecimientos:
This work is supported by grants from the Spanish Ministry of Economy and Competitiveness (BIO2014-57291-R) and co-funded with European Regional Development Funds (ERDF), AECID (D/016099/08) and from the Conselleria ...[+]
Tipo: Artículo

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