- -

Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to Tomato Yellow Leaf Curl Virus in a broad tomato germplasm

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to Tomato Yellow Leaf Curl Virus in a broad tomato germplasm

Show full item record

Caro, M.; Verlaan, MG.; Julián Rodríguez, O.; Finkers, R.; Wolters, AA.; Hutton, S.; Scott, JW.... (2015). Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to Tomato Yellow Leaf Curl Virus in a broad tomato germplasm. Molecular Breeding. 35. doi:10.1007/s11032-015-0329-y

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/63922

Files in this item

Item Metadata

Title: Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to Tomato Yellow Leaf Curl Virus in a broad tomato germplasm
Author: Caro, Myluska Verlaan, Maarten G. Julián Rodríguez, Olga Finkers, Richard Wolters, Anne-Marie A. Hutton, Samuel Scott, John W. Kormelink, Richard Visser, Richard Díez Niclós, Mª José Teresa de Jesús Pérez de Castro, Ana María Bai, Yuling
UPV Unit: Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia
Issued date:
Abstract:
[EN] Tomato yellow leaf curl virus (TYLCV) hampers tomato production worldwide. Our previous studies have focussed on mapping and ultimately cloning of the TYLCV resistance genes Ty-1 and Ty-3. Both genes are derived from ...[+]
Subjects: Breeding , Resistance , RNA-dependent , RNA polymerase (RDR) , Tomato yellow leaf curl virus (TYLCV) , Virus-induced gene silencing (VIGS)
Copyrigths: Reconocimiento (by)
Source:
Molecular Breeding. (issn: 1380-3743 ) (eissn: 1572-9788 )
DOI: 10.1007/s11032-015-0329-y
Publisher:
Springer Verlag (Germany)
Publisher version: http://dx.doi.org/10.1007/s11032-015-0329-y
Description: The online version of this article (doi:10.1007/s11032-015-0329-y) contains supplementary material, which is available to authorized users.
Thanks:
The infectious TYLCV clone was kindly provided by Professor Eduardo Rodriguez Bejarano (Universidad de Malaga). We thank Dick Lohuis for his help with agro-infiltrations, Marc Hendriks and Marjon Arens for RNA isolation ...[+]
Type: Artículo

References

Agrama H, Scott J (2006) Quantitative trait loci for tomato yellow leaf curl virus and tomato mottle virus resistance in tomato. J Am Soc Hortic Sci 131:267–272

Anbinder I, Reuveni M, Azari R, Paran I, Nahon S, Shlomo H, Chen L, Lapidot M, Levin I (2009) Molecular dissection of tomato leaf curl virus resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet 119:519–530

Bai Y, Van der Hulst R, Huang C, Wei L, Stam P, Lindhout P (2004) Mapping Ol-4, a gene conferring resistance to Oidium neolycopersici and originating from Lycopersicon peruvianum LA2172, requires multi-allelic, single-locus markers. Theor Appl Genet 109:1215–1223 [+]
Agrama H, Scott J (2006) Quantitative trait loci for tomato yellow leaf curl virus and tomato mottle virus resistance in tomato. J Am Soc Hortic Sci 131:267–272

Anbinder I, Reuveni M, Azari R, Paran I, Nahon S, Shlomo H, Chen L, Lapidot M, Levin I (2009) Molecular dissection of tomato leaf curl virus resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet 119:519–530

Bai Y, Van der Hulst R, Huang C, Wei L, Stam P, Lindhout P (2004) Mapping Ol-4, a gene conferring resistance to Oidium neolycopersici and originating from Lycopersicon peruvianum LA2172, requires multi-allelic, single-locus markers. Theor Appl Genet 109:1215–1223

Butterbach P, Verlaan MG, Dullemans A, Lohuis D, Visser RGF, Bai Y, Kormelink R (2014) The TYLCV Resistance Gene Ty-1 confers resistance in tomato through enhanced transcriptional gene silencing. PNAS 111:12942–12947

Cohen S, Lapidot M (2007) Appearance and expansion of TYLCV: a historical point of view. In: Czosnek H (ed) Tomato yellow leaf curl virus disease. Springer, The Netherlands, pp 3–12

Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R, Group GPA (2011) The variant call format and VCFtools. Bioinformatics 27:2156–2158

Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821

Friedmann M, Lapidot M, Cohen S, Pilowsky M (1998) A novel source of resistance to Tomato yellow leaf curl virus exhibiting a symptomless reaction to viral infection. J Am Soc Hortic Sci 123:1004–1007

Hanson PM, Green SK, Kuo G (2006) Ty-2, a gene on chromosome 11 conditioning geminivirus resistance in tomato. Tomato Genet Coop Rep 56:17–18

Hutton SF, Scott JW (2013) Fine-mapping and cloning of Ty-1 and Ty-3; and mapping of a new TYLCV resistance locus, “Ty-6”. In: Tomato breeders round table proceedings 2013, Chiang Mai, Thailand

Hutton SF, Scott JW, Schuster DJ (2012) Recessive resistance to tomato yellow leaf curl virus from the tomato cultivar tyking is located in the same region as Ty-5 on chromosome 4. HortScience 47:324–327

Ji Y, Schuster DJ, Scott JW (2007) Ty-3, a begomovirus resistance locus near the Tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato. Mol Breeding 20:271–284

Ji Y, Scott JW, Schuster DJ, Maxwell DP (2009) Molecular mapping of Ty-4, a new tomato yellow leaf curl virus resistance locus on chromosome 3 of tomato. J Am Soc Hortic Sci 134:281–288

Levin I, Karniel U, Fogel D, Reuveni M, Gelbart D, Evenor D, Chen L, Nahon S, Shlomo H, Machbosh Z, Lapidot M (2013) Cloning and analysis of the tomato yellow leaf curl virus resistance gene Ty-5. In: Tomato breeders round table proceedings 2013, Chiang Mai, Thailand

Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 25:1754–1760

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The sequence alignment/map format and SAMtools. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079

Mejía L, Teni RE, Vidavski F, Czosnek H, Lapidot M, Nakhla MK, Maxwell DP (2005) Evaluation of tomato germplasm and selection of breeding lines for resistance to begomoviruses in Guatemala. In: Momol MT, Ji P, Jones JB (eds) Proceedings 1st international symposium on tomato diseases. Acta Horticult 695:251–256

Menda N, Strickler SR, Edwards JD, Bombarely A, Dunham DM, Martin GB, Mejia L, Hutton SF, Havey MJ, Maxwell DP, Mueller LA (2014) Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins. BMC Plant Biol 14(1):287

Pérez de Castro A, Díez MJ, Nuez F (2007) Inheritance of Tomato yellow leaf curl virus resistance derived from Solanum pimpinellifolium UPV16991. Plant Dis 91:879–885

Pérez de Castro A, Julián O, Díez M (2013) Genetic control and mapping of Solanum chilense LA1932, LA1960 and LA1971-derived resistance to tomato yellow leaf curl disease. Euphytica 190:203–214

Pico B, Ferriol M, Diez MJ, Nuez F (1999) Developing tomato breeding lines resistant to tomato yellow leaf curl virus. Plant Breeding 118:537–542

Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP (2011) Integrative genomics viewer. Nature. Biotech 29:24–26

Sahu PP, Puranik S, Khan M, Prasad M (2012) Recent advances in tomato functional genomics: utilization of VIGS. Protoplasma 249(4):1017–1027

Scott JW, Stevens MR, Barten JHM, Thome CR, Polston JE, Schuster DJ, Serra CA (1996) Introgression of resistance to whitefly-transmitted geminiviruses from Lycopersicon chilense to tomato. In: Gerling D, Mayer RT (eds) Bemisia 1995; taxonomy, biology, damage control, and management. Intercept Press, Andover, pp 357–367

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

The 100 Tomato Genome Sequencing Consortium (2014) Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J 80:136–148

The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485:635–641

Vanitharani R, Chellappan P, Pita JS, Fauquet CM (2004) Differential roles of AC2 and AC4 of cassava geminiviruses in mediating synergism and suppression of posttranscriptional gene silencing. J Virol 78:9487–9498

Verlaan MG, Szinay D, Hutton SF, de Jong H, Kormelink R, Visser RGF, Scott JW, Bai Y (2011) Chromosomal rearrangements between tomato and Solanum chilense hamper mapping and breeding of the TYLCV resistance gene Ty-1. Plant J 68:1093–1103

Verlaan MG, Hutton SF, Ibrahem RM, Kormelink R, Visser RGF, Scott JW, Edwards JD, Bai Y (2013) The tomato yellow leaf curl virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA-dependent RNA polymerases. PLoS Genet 9(3):e1003399. doi: 10.1371/journal.pgen.1003399

Vidavski F (2007) Exploitation of resistance genes found in wild tomato species to produce resistant cultivars; Pile up of Resistant Genes. In: Czosnek H (ed) Tomato yellow leaf curl virus disease. Springer, Netherlands, pp 363–372

Willmann MR, Endres MW, Cook RT, Gregory BD (2011) The functions of RNA-dependent RNA polymerases in arabidopsis. In: The Arabidopsis Book, e0146

Yang X, Caro M, Hutton SF, Scott JW, Guo Y, Wang X, Rashid MH, Szinay D, de Jong H, Visser RGF, Bai Y, Du Y (2014) Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato. Mol Breeding 34:749–760

Zamir D, Ekstein Michelson I, Zakay Y, Navot N, Zeidan M, Sarfatti M, Eshed Y, Harel E, Pleban T, van Oss H (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1. Theor Appl Genet 88:141–146

[-]

recommendations

 

This item appears in the following Collection(s)

Show full item record