Akashi Y, Fukunda N, Wako T, Masuda M, Kato K (2002) Genetic variation and phylogenetic relationships in East and South Asian melons, Cucumis melo L., based on the analysis of five isozymes. Euphytica 125:385–396
Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 119(3):507–517
Aranzana MJ, Abbassi el-K, Howad W, Arús P (2010) Genetic variation, population structure and linkage disequilibrium in peach commercial varieties. BMC Genet 11:69
[+]
Akashi Y, Fukunda N, Wako T, Masuda M, Kato K (2002) Genetic variation and phylogenetic relationships in East and South Asian melons, Cucumis melo L., based on the analysis of five isozymes. Euphytica 125:385–396
Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 119(3):507–517
Aranzana MJ, Abbassi el-K, Howad W, Arús P (2010) Genetic variation, population structure and linkage disequilibrium in peach commercial varieties. BMC Genet 11:69
Bates DM, Robinson RW (1995) Cucumbers, melons and water-melons. In: Smartt J, Simmonds NW (eds) Evolution of Crop Plants, 2nd edn. Longman Scientific, Harlow, pp 89–96
Blanca J, Cañizares J, Ziarsolo P, Esteras C, Mir G, Nuez F, Garcia-Mas J, Picó B (2011) Melon transcriptome characterization. SSRs and SNPs discovery for high throughput genotyping across the species. Plant Genome 4(2):118–131
Blanca J, Esteras C, Ziarsolo P, Perez D, Fernández V, Collado C, Rodriguez R, Ballester A, Roig C, Cañizares J, Pico B (2012) Transcriptome sequencing for SNP discovery across Cucumis melo. BMC Genomics 13:280. doi: 10.1186/1471-2164-13-280
Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM (2007) Yogesh Ramdoss and Edward S. BucklerTASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23(19):2633–2635
Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172:1165–1177
Chancerel E, Lepoittevin C, Le Provost G et al (2011) Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. BMC Genomics 12:368
Ching A, Caldwell KS, Jung M, Dolan M, Smith OSH, Tingey S, Morgante M, Rafalski AJ (2002) SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet 3:19. doi: 10.1186/1471-2156-3-19
Choudhary S, Gaur R, Gupta S, Bhatia S (2012) Derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea. Theor Appl Genet 124(8):1449–1462
Clepet C, Joobeur T, Zheng Y, Jublot D, Huang M, Truniger V, Boualem A, Hernandez-Gonzalez ME, Dolcet-Sanjuan R, Portnoy V, Mascarell-Creus A, Caño-Delgado A, Katzir N, Bendahmane A, Giovannoni JJ, Aranda MA, Garcia-Mas J, Fei Z (2011) Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon. BMC Genomics 12:252
Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R (2011) Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theor Appl Genet 122(3):523–531
Deleu W, González V, Monfort A, Bendahmane A, Puigdomènech P, Arús P, Garcia-Mas J (2007) Structure of two melon regions reveals high microsynteny with sequenced plant species. Mol Genet Genomics 278(6):611–622
Deleu W, Esteras C, Roig C, Gonzalez-To M, Fernandez-Silva I, Gonzalez-Ibeas D, Blanca J, Aranda MA, Arus P, Nuez F, Monforte AJ, Picó MB, Garcia-Mas J (2009) A set of EST-SNPs for map saturation and cultivar identification in melon. BMC Plant Biol 9:90
Dhillon NPS, Ranjana R, Singh K, Eduardo I, Monforte AJ, Pitrat M, Dhillon NK, Singh PP (2007) Diversity among landraces of Indian snapmelon (Cucumis melo var. momordica). Genet Resour Crop Evol 54:1267–1283
Dhillon NPS, Singh J, Fergany M, Monforte AJ, Sureja AK (2009) Phenotypic and molecular diversity among landraces of snapmelon (Cucumis melo var. momordica) adapted to the hot and humid tropics of eastern India. Plant Genet Resour: Charact Util 7(3):291–300. doi: 10.1017/S1479262109990050
Díaz A, Fergany M, Formisano G, Ziarsolo P, Blanca J, Fei Z, Staub JE, Zalapa JE, Cuevas HE, Dace G, Oliver M, Boissot N, Dogimont C, Pitrat M, Hofstede R, Koert P, Harel-Beja R, Tzuri G, Portnoy V, Cohen S, Schaffer A, Katzir N, Xu Y, Zhang H, Fukino N, Matsumoto S, Garcia-Mas J, Monforte AJ (2011) A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.). BMC Plant Biol 11:111. doi: 10.1186/1471-2229-11-111
Escribano S, Lázaro A, Cuevas HE, López-Sesé AI, Staub JE (2012) Spanish melons (Cucumis melo L.) of the Madrid provenance: a unique germplasm reservoir. Genet Resour Crop Ev. doi: 10.1007/s10722-011-9687-4
Esteras C, Lunn J, Sulpice R, Blanca J, Garcia-Mas J, Pitrat M, Nuez F, Picó B (2009) Phenotyping a highly diverse core collection of melons to be screened using EcoTILLING. Plant Gem Lisbon Plant Genomics European Meeting. p213
Esteras C, Gómez P, Monforte AJ, Blanca J, Vicente-Dólera N, Roig C, Nuez F, Picó B (2012a) High-throughput SNP genotyping in Cucurbita pepo for map construction and quantitative trait loci mapping. BMC Genomics 13:80. doi: 10.1186/1471-2164-13-80
Esteras C, Nuez F, Picó B (2012b) Genetic diversity studies in Cucurbits using molecular tools. In: Wang Y, Behera TK, Kole C (eds) Cucurbits: genetics, genomics and breeding of cucurbits. New Hampshire: Science Publishers Inc, Enfield
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620
FAO (2012) FAOSTAT: http://faostat.fao.org/site/291/default.aspx . Accessed 4 January 2012
Fergany M, Kaur B, Monforte AJ, Pitrat M, Rys C et al (2011) Variation in melon (Cucumis melo) landraces adapted to the humid tropics of southern India. Genet Resour Crop Ev 58(2):225–243
Fernandez-Silva I, Eduardo I, Blanca J, Esteras C, Pico B, Nuez F, Arus P, Garcia-Mas J, Monforte AJ (2008) Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.). Theor Appl Genet 118:139–150
Fernández-Trujillo JP, Picó B, Garcia-Mas J, Álvarez JM, Monforte AJ (2011) Breeding for fruit quality in melon. In: Jenks MA, Bebeli P (eds) Breeding for fruit quality. Wiley-Blackwell, Ames Chapter 12
Fita A, Nuez F, Picó B (2011) Diversity in root architecture and response to P deficiency in seedlings of Cucumis melo L. Euphytica 181(3):323–339. doi: 10.1007/s10681-011-0432-z
García E, Jamilena M, Álvarez JI, Arnedo T, Oliver JL, Lozano R (1998) Genetic relationships among melon breeding lines revealed by DNA markers and agronomic traits. Theor Appl Genet 96:878–885
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González VM, Hénaff E, Cámara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodríguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorente-Galdos B, Melé M, Yang L, Weng Y, Navarro A, Marques-Bonet T, Aranda MA, Nuez, Picó B, Gabaldón B, Roma G, Guigó R, Casacuberta JM, Arús P, Puigdomènech P (2012) The genome of melon (Cucumis melo L.). Genome amplification in the absence of recent duplication in an old widely cultivated species. PNAS, doi/ 10.1073/pnas.1205415109
Gómez-Guillamón ML, Sánchez F, Fernández-Muñoz R (1998) Caracterización de cultivares de melón. Actas de las Jornadas de Selección y Mejora de Plantas Hortícolas. Córdoba, Spain (in Spanish)
González-Ibeas D, Blanca J, Roig C, González-To M, Picó B, Truniger V, Gómez P, Deleu W, Caño-Delgado A, Arús P, Nuez F, Garcia-Mas J, Puigdomènech P, Aranda MA (2007) MELOGEN: an EST database for melon functional genomics. BMC Genomics 8:306
Graham IA, Besser K, Blumer S et al (2010) The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin. Science 327(5963):328–331. doi: 10.1126/science.1182612
Harel-Beja R, Tzuri G, Portnoy V, Lotan-Pompan M, Lev S, Cohen S, Dai N, Yeselson L, Meir A, Libhaber SE, Avisar E, Melame T, van Koert P, Verbakel H, Hofstede R, Volpin H, Oliver M, Fougedoire A, Stalh C, Fauve J, Copes B, Fei Z, Giovannoni J, Ori N, Lewinsohn E, Sherman A, Burger J, Tadmor Y, Schaffer AA, Katzir N (2010) A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes. Theor Appl Genet 121:511–533
Hyten DL, Song Q, Choi I-Y et al (2008) High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 116:945–952. doi: 10.1007/s00122-008-0726-2
Janick J, Paris HS, Parrish DC (2007) The cucurbits of Mediterranean antiquity: identification of taxa from ancient images and descriptions. Ann Bot 100:1441–1457
Jeffrey C (1980) A review of the Cucurbitaceae. Bot J Linn Soc 81:233–247
Khana MA, Han Y, Zhao YF, Korban SS (2012) A high-throughput apple SNP genotyping platform using the GoldenGate™ assay. Gene 494(2):196–201. doi: 10.1016/j.gene.2011.12.001
Krzanowski WJ (2000) Principles of Multivariate analysis: a User’s Perspective. Oxford University Press, Oxford
Liu K, Muse SV (2005) Powermarker: integrated analysis environment for genetic marker data. Bioinformatics 21:2128–2129. doi: 10.1093/bioinformatics/bti282
López-Sesé AI, Staub JE, Gómez-Guillamón ML (2003) Genetic analysis of Spanish melon (Cucumis melo L.) germplasm using a standardized molecular-marker array and geographically diverse reference accessions. Theor Appl Genet 108(1):41–52
Luan F, Delannay I, Staub JE (2008) Chinese melon (Cucumis melo L.) diversity analyses provide strategies for germplasm curation, genetic improvement, and evidentiary support of domestication patterns. Euphytica 164:445–461
McCreight JD, Staub JE (1993) Indo–US Cucumis germplasm expedition. HortScience 28:467
McMullen MD, Kresovich S, Sanchez H et al (2009) Genetic properties of the maize nested association mapping population. Science 325(5941):737–740. doi: 10.1126/science.1174320
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K et al (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. PNAS 106(30):12273–12278
Mliki A, Staub JE, Zhangyong S, Ghorbel A (2001) Genetic diversity in melon (Cucumis melo L.): an evaluation of African germplasm. Genet Resour Crop Evol 48:587–597
Monforte AJ, Garcia-Mas J, Arús P (2003) Genetic variability in melon based on microsatellite variation. Plant Breed 122:153–157
Munger HM, Robinson RW (1991) Nomenclature of Cucumis melo L. Cucurbit Genet Coop Rpt 14:43–44
Nakata E, Staub JE, López-Sesé AI, Katzir N (2005) Genetic diversity of Japanese melon cultivars (Cucumis melo L.) as assessed by random amplified polymorphic DNA and simple sequence repeat markers. Genet Resour Crop Evol 52:405–419
Naudin C (1859) Review des cucurbitace’es cultive Museum. Ann Sci Natl Ser 4 Bot 12:79–164
Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. II Gene frequency data. J Mol Evol 19:153–170
Nhi PTP, Akashi Y, Hang TTM, Tanaka K, Aierken Y, Yamamoto T, Nishida H, Long C, Kato K (2010) Genetic diversity in Vietnamese melon landraces revealed by the analyses of morphological traits and nuclear and cytoplasmic molecular markers. Breeding Sci 60:255–266
Nieto C, Piron F, Dalmais M, Marco CF, Moriones E, Gómez-Guillamón ML, Truniger V, Gómez P, Garcia-Mas J, Aranda MA, Bendahmane A (2007) EcoTILLING for the identification of allelic variants of melon eIF4E, a factor that controls virus susceptibility. BMC Plant Biol 7:34. doi: 10.1186/1471-2229-7-34
Nuez F, Ferrando C, Díez MJ, Costa J, Catalá MS, Cuartero J, Gómez-Guillamón ML (1988) Collecting Cucumis melo L. in Spain. Cucurbit Genet Coop Rep 11:54–56
Paris HS, Amar Z, Lev E (2012) Medieval emergence of sweet melons, Cucumis melo (Cucurbitaceae). Ann Bot 110(1):23–33
Patterson N, Price AL, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 2(12):e190. doi: 10.1371/journal.pgen.0020190
Peltier J (2009) LOESS Smoothing in Excel. http://peltiertech.com/WordPress/loess-smoothing-in-excel/
Pitrat M (2008) Melon (Cucumis melo L.). In: Prohens J, Nuez F (eds) Handbook of crop breeding Vol I: vegetables. Springer, New York, pp 283–315
Pitrat M, Hanelt P, Hammer K (2000) Some comments on infraspecic classification of cultivars of melon. Acta Hortic 510:29–36
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Heredity 86:248–249
Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler ES (2001) Structure of linkage disequilibrium and phenotypic associations in the maize genome. PNAS 98(20):11479–11484
Renner SS, Schaefer H, Kocyan A (2007) Phylogenetics of Cucumis (Cucurbitaceae): cucumber (C. sativus) belongs in an Asian/Australian clade far from melon (C. melo). BMC Evol Biol 7:58. doi: 10.1186/1471-2148-7-58
Robbins MD, Sim SC, Yang W, Van Deynze A, van der Knaap E, Joobeur T, Francis DM (2011) Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato. J Exp Bot 62(6):1831–1845
Rostoks N, Ramsay L, MacKenzie K et al (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc Natl Acad Sci USA 103(49):18656–18661
Rousset F (2008) Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resources 8:103–106
Roy A, Bal SS, Fergany M, Kaur S, Singh H, Malik AA, Singh J, Monforte AJ, Dhillon NPS (2012) Wild melon diversity in India (Punjab State). Genet Resour Crop Ev 59(5):755–767
Rubatzky VE, Yamaguchi M (1997) World vegetable principles, production and nutritive values, 2nd edn. Chapman and Hall, International Thompson Publ, New York 853 p
Sebastian P, Schaefer H, Telford IRH, Renner SS (2010) Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species from melon is from Australia. Proc Nat Acad Sci USA 107:14269–14273
Silberstein L, Kovalski I, Huang R, Anagnostou K, Jahn MK, Perl-Treves R (1999) Molecular variation in melon (Cucumis melo L.) as revealed by RFLP and RAPD markers. Sci Hort 79:101–111
Sim S-C, Van Deynze A, Stoffel K et al (2012) High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding. PLoS ONE 7(9):e45520. doi: 10.1371/journal.pone.0045520
Staub JE, Danin-Poleg Y, Fazio G, Horejsi T, Reis N, Katzir N (2000) Comparative analysis of cultivated melon groups (Cucumis melo L.) using random amplified polymorphic DNA and simple sequence repeat markers. Euphytica 115:225–241
Staub JE, López-Sesé I, Fanourakis N (2004) Diversity among melón landraces (Cucumis melo L.) from Greece and their genetic relationships with other melon germplasm of diverse origins. Euphytica 136:151–166
Stepansky A, Kovalski I, Perl-Treves R (1999) Intraspecific classification of melons (Cucumis melo L.) in view of their phenotypic and molecular variation. Plant Syst Evol 217:313–332
Tanaka K, Nishitani A, Akashi Y, Sakata Y, Nishida H, Yoshino H, Kato K (2007) Molecular characterization of South and East Asian melon, Cucumis melo L., and the origin of group conomon var. makuwa and var. conomon revealed by RAPD analysis. Euphytica 153:233–247
van Berloo R (2008) GGT 2.0: Versatile software for visualization and analysis of genetic data. J Hered 99(2):232–236. (Available online at: http://dx.doi.org/10.1093/jhered/esm109 )
van Berloo R, Zhu A, Ursem R, Verbakel H, Gort G, van Eeuwijk FA (2008) Diversity and linkage disequilibrium analysis within a selected set of cultivated tomatoes. Theor Appl Genet 117(1):89–101
van Leeuwen H, Monfort A, Zhang H-B, Puigdomenech P (2003) Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library, microcolinearity between Cucumis melo and Arabidopsis thaliana. Plant Mol Biol 51:703–718
Whitaker TW, Bemis WP (1976) Cucurbits, Cucumis, Citrullus, Cucurbita, Lagenaria (Cucurbitaceae). In: Simmonds NW (ed) Evolution of Crop Plants. Longrams, New York, USA, pp 64–69
Yamamoto T, Nagasaki H, Yonemaru J-I, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11:267. doi: 10.1186/1471-2164-11-267
Yan J, Yang X, Shah T et al (2010) High-throughput SNP genotyping with the GoldenGate assay in maize. Mol Breed 25:441–451. doi: 10.1007/s11032-009-9343-2
Yeh FC, Yang R, Boyle TJ, Ye Z, Xiyan JM (2000) POPGENE 32, microsoft windows-based freeware for population genetic analysis. Molecular biology and biotechnology centre. University of Alberta, Edmonton
Yuste-Lisbona FJ, López-Sesé AI, Gómez-Guillamón ML (2010) Inheritance of resistance to races 1, 2 and 5 of powdery mildew in the melon TGR-1551. Plant Breeding 129(1):72–75
Zhao K, Wright M, Kimball J, Eizenga G, McClung A et al (2010) Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS ONE 5(5):e10780. doi: 10.1371/journal.pone.0010780
Zhukovsky P (1951) Agricultural Structure of Turkey (Anatolia). Türkiye Seker Fab. AS. Yay. 20. (in Turkish)
[-]