dc.contributor.author |
Esteras Gómez, Cristina
|
es_ES |
dc.contributor.author |
Formisano, G.
|
es_ES |
dc.contributor.author |
Roig Montaner, Mª Cristina
|
es_ES |
dc.contributor.author |
Díaz Bermúdez, Aurora
|
es_ES |
dc.contributor.author |
Blanca Postigo, José Miguel
|
es_ES |
dc.contributor.author |
Garcia-Mas, J.
|
es_ES |
dc.contributor.author |
Gomez-Guillamon, M.L.
|
es_ES |
dc.contributor.author |
Lopez-Sese, A.
|
es_ES |
dc.contributor.author |
Lazaro, A.
|
es_ES |
dc.contributor.author |
Monforte Gilabert, Antonio José
|
es_ES |
dc.contributor.author |
Picó Sirvent, María Belén
|
es_ES |
dc.date.accessioned |
2016-06-02T09:43:58Z |
|
dc.date.available |
2016-06-02T09:43:58Z |
|
dc.date.issued |
2013-05 |
|
dc.identifier.issn |
0040-5752 |
|
dc.identifier.uri |
http://hdl.handle.net/10251/65090 |
|
dc.description.abstract |
Novel sequencing technologies were recently used to generate sequences from multiple melon (Cucumis melo L.) genotypes, enabling the in silico identification of large single nucleotide polymorphism (SNP) collections. In order to optimize the use of these markers, SNP validation and large-scale genotyping are necessary. In this paper, we present the first validated design for a genotyping array with 768 SNPs that are evenly distributed throughout the melon genome. This customized Illumina GoldenGate assay was used to genotype a collection of 74 accessions, representing most of the botanical groups of the species. Of the assayed loci, 91 % were successfully genotyped. The array provided a large number of polymorphic SNPs within and across accessions. This set of SNPs detected high levels of variation in accessions from this crop s center of origin as well as from several other areas of melon diversification. Allele distribution throughout the genome revealed regions that distinguished between the two main groups of cultivated accessions (inodorus and cantalupensis). Population structure analysis showed a subdivision into five subpopulations, reflecting the history of the crop. A considerably low level of LD was detected, which decayed rapidly within a few kilobases. Our results show that the GoldenGate assay can be used successfully for high-throughput SNP genotyping in melon. Since many of the genotyped accessions are currently being used as the parents of breeding populations in various programs, this set of mapped markers could be used for future mapping and breeding efforts. |
es_ES |
dc.description.sponsorship |
This project was carried out in the frame of the MELONOMICS project (2009-2012) of the Fundacion Genoma Espana and with the contributions of the PLAT KKBE project PIM2010PKB-00691. |
en_EN |
dc.language |
Inglés |
es_ES |
dc.publisher |
Springer Verlag (Germany) |
es_ES |
dc.relation.ispartof |
TAG Theoretical and Applied Genetics |
es_ES |
dc.rights |
Reserva de todos los derechos |
es_ES |
dc.subject.classification |
GENETICA |
es_ES |
dc.title |
SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium |
es_ES |
dc.type |
Artículo |
es_ES |
dc.identifier.doi |
10.1007/s00122-013-2053-5 |
|
dc.relation.projectID |
info:eu-repo/grantAgreement/MICINN//PIM2010PKB-00691/ES/SUGARS AND FRUIT QUALITY IN MELON/ |
es_ES |
dc.rights.accessRights |
Cerrado |
es_ES |
dc.contributor.affiliation |
Universitat Politècnica de València. Departamento de Biotecnología - Departament de Biotecnologia |
es_ES |
dc.description.bibliographicCitation |
Esteras Gómez, C.; Formisano, G.; Roig Montaner, MC.; Díaz Bermúdez, A.; Blanca Postigo, JM.; Garcia-Mas, J.; Gomez-Guillamon, M.... (2013). SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium. TAG Theoretical and Applied Genetics. 126(5):1285-1303. https://doi.org/10.1007/s00122-013-2053-5 |
es_ES |
dc.description.accrualMethod |
S |
es_ES |
dc.relation.publisherversion |
http://dx.doi.org/10.1007/s00122-013-2053-5 |
es_ES |
dc.description.upvformatpinicio |
1285 |
es_ES |
dc.description.upvformatpfin |
1303 |
es_ES |
dc.type.version |
info:eu-repo/semantics/publishedVersion |
es_ES |
dc.description.volume |
126 |
es_ES |
dc.description.issue |
5 |
es_ES |
dc.relation.senia |
239986 |
es_ES |
dc.contributor.funder |
Ministerio de Ciencia e Innovación |
es_ES |
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