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Phylodynamics of Pepino mosaic virus in Spain

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Phylodynamics of Pepino mosaic virus in Spain

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dc.contributor.author Gomez, P. es_ES
dc.contributor.author Sempere, R.N. es_ES
dc.contributor.author Aranda, M.A. es_ES
dc.contributor.author Elena Fito, Santiago Fco es_ES
dc.date.accessioned 2016-09-28T07:31:32Z
dc.date.available 2016-09-28T07:31:32Z
dc.date.issued 2012-11
dc.identifier.issn 0929-1873
dc.identifier.uri http://hdl.handle.net/10251/70544
dc.description.abstract [EN] Pepino mosaic virus (PepMV) is an emerging pathogen that causes severe economic losses in tomato crops in the Northern hemisphere. After its first identification, the new viral strain PepMV-CH2 has been isolated in several countries worldwide. In order to further understand the evolutionary dynamics of PepMV before and after PepMV-CH2 emergence, we analyzed a collection of PepMV isolates from southeastern Spain, estimating the rate of PepMV molecular evolution and the coalescence process for the effective number of PepMV infections using a Bayesian phylogenetic approach. Our results show that the rate of PepMV molecular evolution was 5.570 x 10(-3) substitutions/site/year, a value which is approximately an order of magnitude higher than the rates recently reported for other plant RNA viruses. Moreover, PepMV-CH2 was estimated to have originated in 2000, coincident with the onset of PepMV-CH2 infections in southeastern Spain, its population following now an expansion process. This further illustrates that genetic and ecological interactions among different viral strains can modulate the evolutionary dynamics of PepMV and determine its epidemiological profile. es_ES
dc.description.sponsorship We thank an anonymous reviewer for very insightful comments. Work in Murcia was supported by grant EUI2009-04009 (PLANT-KBBE2009 program, Ministerio de Ciencia e Innovacion, Spain). Work in Valencia was supported by grant BFU2009-06993 (Ministerio de Ciencia e Innovacion, Spain). P. G. was supported by a "Juan de la Cierva" post-doctoral contract from (Ministerio de Ciencia e Innovacion, Spain). R.N.S. was the recipient of a graduate fellowship from Fundacion Seneca (Murcia, Spain).
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation info:eu-repo/grantAgreement/MICINN//EUI2009-04009/ES/IDENTIFICATION OF NEW PLANT SUSCEPTIBILITY FACTORS WHOSE MODIFICATION WOULD CONFER VIRUS RESISTANCE/ es_ES
dc.relation MICINN/PLANT-KBBE2009 es_ES
dc.relation info:eu-repo/grantAgreement/MICINN//BFU2009-06993/ES/Biologia Evolutiva Y De Sistemas De La Emergencia De Fitovirus De Rna/ es_ES
dc.relation.ispartof European Journal of Plant Pathology es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Evolutionary dynamics es_ES
dc.subject Molecular epidemiology es_ES
dc.subject PepMV es_ES
dc.subject Rate of molecular evolution es_ES
dc.subject Tomato disease es_ES
dc.subject Virus evolution es_ES
dc.title Phylodynamics of Pepino mosaic virus in Spain es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s10658-012-0019-0
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.description.bibliographicCitation Gomez, P.; Sempere, R.; Aranda, M.; Elena Fito, SF. (2012). Phylodynamics of Pepino mosaic virus in Spain. European Journal of Plant Pathology. 134(3):445-449. https://doi.org/10.1007/s10658-012-0019-0 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1007/s10658-012-0019-0 es_ES
dc.description.upvformatpinicio 445 es_ES
dc.description.upvformatpfin 449 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 134 es_ES
dc.description.issue 3 es_ES
dc.relation.senia 232204 es_ES
dc.contributor.funder Ministerio de Ciencia e Innovación
dc.description.references Adams, M. J., Antoniw, J. F., Bar-Joseph, M., Brunt, A. A., Candresse, T., Foster, G. D., Martelli, G. P., Milne, R. G., Zavriev, S. K., & Fauquet, C. M. (2004). The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Archives of Virology, 149, 1045–1060. es_ES
dc.description.references Aguilar, J. M., Hernandez-Gallarod, M. D., Cenis, J. L., Lacasa, A., & Aranda, M. A. (2002). Complete sequence of the Pepino mosaic virus RNA genome. Archives of Virology, 147, 2009–2015. es_ES
dc.description.references Alfaro-Fernández, A., Sánchez-Navarro, J., Cebrián, M. D., Córdoba-Sellés, M. D., Pallás, V., & Jordá, C. (2009). Simultaneous detection and identification of Pepino mosaic virus (PepMV) isolates by multiplex one-step RT-PCR. European Journal of Plant Pathology, 125, 143–158. es_ES
dc.description.references Cotillon, A. C., Girard, M., & Ducouret, S. (2002). Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV). Archives of Virology, 147, 2231–2238. es_ES
dc.description.references De la Iglesia, F., Martínez, F., Hillung, J., Cuevas, J. M., Gerrish, P. J., Daròs, J. A., & Elena, S. F. (2012). Luria-Delbrück estimation of Turnip mosaic virus mutation rate in vivo. Journal of Virology, 86, 3386–3388. es_ES
dc.description.references Drummond, A., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214. es_ES
dc.description.references Drummond, A. J., Rambaut, A., Shapiro, B., & Pybus, O. G. (2005). Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185–1192. es_ES
dc.description.references Drummond, A. J., Ho, S. Y. W., Phillips, M. J., & Rambaut, A. (2006). Relaxed phylogenetics and dating with confidence. PLoS Biology, 4, 699–710. es_ES
dc.description.references Duffy, S., & Holmes, E. C. (2008). Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of Virology, 82, 957–965. es_ES
dc.description.references Duffy, S., Shackelton, L., & Holmes, E. C. (2008). Rates of evolutionary change in viruses: Patterns and determinants. Nature Reviews Genetics, 9, 267–276. es_ES
dc.description.references EPPO (2009). EPPO alert list-viruses. Pepino mosaic potexvirus—a new virus of tomato introduced into Europe. www.eppo.org/QUARANTINE/Alert_List/alert_list.htm . es_ES
dc.description.references Fargette, D., Pinel, A., Rakotomalala, M., Sangu, E., Traore, O., Sereme, D., Sorho, F., Issaka, S., Hebrard, E., Sere, Y., Kanyeka, Z., & Konate, G. (2008). Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most RNA animal viruses. Journal of Virology, 82, 3584–3589. es_ES
dc.description.references Gibbs, A. J., Ohshima, K., Phillips, M. J., & Gibbs, M. J. (2008). The prehistory of potyviruses: Their initial radiation was during the dawn of agriculture. PLoS One, 3, e2523. es_ES
dc.description.references Gómez, P., Sempere, R. N., Elena, S. F., & Aranda, M. A. (2009). Mixed infections of Pepino mosaic virus strains modulate the evolutionary dynamics of this emergent virus. Journal of Virology, 83, 12378–12387. es_ES
dc.description.references Gómez, P., Sempere, R. N., Aranda, M. A. (2012). Pepino mosaic virus and tomato torrado virus: Two emerging viruses affecting tomato crops in the Mediterranean basin. In G. Loebenstein, & H. Lecoq (Eds.), Advances in virus research (pp. 505–532). Academic Press. es_ES
dc.description.references Hanssen, I. M., & Thomma, B. (2010). Pepino mosaic virus: A successful pathogen that rapidly evolved from emerging to endemic in tomato crops. Molecular Plant Pathology, 11, 179–189. es_ES
dc.description.references Hanssen, I. M., Paeleman, A., Wittemans, L., Goen, K., Lievens, B., Bragard, C., Vanachter, A., & Thomma, B. (2008). Genetic characterization of Pepino mosaic virus isolates from Belgian greenhouse tomatoes reveals genetic recombination. European Journal of Plant Pathology, 121, 131–146. es_ES
dc.description.references Hasiów-Jaroszewska, B., Borodynko, N., Jackowiak, P., Figlerowicz, M., & Pospieszny, H. (2010). Pepino mosaic virus—a pathogen of tomato crops in Poland: Biology, evolution and diagnostics. Journal of Plant Protection Research, 50, 470–476. es_ES
dc.description.references Jones, R. A. C., Koenig, R., & Lesemann, D. E. (1980). Pepino mosaic virus, a new potexvirus from pepino (Solanum muricantum). Annals of Applied Biology, 94, 61–68. es_ES
dc.description.references Ling, K. S., Wintermantel, W. M., & Bledsoe, M. (2008). Genetic composition of Pepino mosaic virus population in North American greenhouse tomatoes. Plant Disease, 92, 1683–1688. es_ES
dc.description.references Malpica, J. M., Fraile, A., Moreno, I., Obies, C. I., Drake, J. W., & García-Arenal, F. (2002). The rate and character of spontaneous mutation in an RNA virus. Genetics, 162, 1505–1511. es_ES
dc.description.references Martin, D. P., Lemey, P., Lott, M., Moulton, V., Posada, D., & Lefeuvre, P. (2010). RDP3: A flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462–2463. es_ES
dc.description.references Mumford, R. A., & Metcalfe, E. J. (2001). The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru. Archives of Virology, 146, 2455–2460. es_ES
dc.description.references Pagán, I., Cordoba-Selles, M., Martínez-Priego, L., Fraile, A., Malpica, J., Jordá, C., & García-Arenal, F. (2006). Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain. Phytopathology, 96, 274–279. es_ES
dc.description.references Sanjuán, R. (2012). From molecular genetics to phylodynamics: Evolutionary relevance of mutation rates across viruses. PLoS Pathogens, 8, e1002685. es_ES
dc.description.references Sanjuán, R., Agudelo-Romero, P., & Elena, S. F. (2009). Upper-limit mutation rate estimation for a plant RNA virus. Biology Letters, 5, 394–396. es_ES
dc.description.references Simmons, H. E., Holmes, E. C., & Stephenson, A. G. (2008). Rapid evolutionary dynamics of Zucchini yellow mosaic virus. Journal of General Virology, 89, 1081–1085. es_ES
dc.description.references Tamura, K., & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512–526. es_ES
dc.description.references Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731–2739. es_ES
dc.description.references Tromas, N., & Elena, S. F. (2010). The rate and spectrum of spontaneous mutations in a plant RNA virus. Genetics, 185, 983–989. es_ES
dc.description.references Van der Vlugt, R. A., Stijger, C. M., Verhoeven, J. T. J., & Lesemann, D. E. (2000). First report of Pepino mosaic virus on tomato. Plant Disease, 84, 103–103. es_ES
dc.description.references Verhoeven, J. T. J., Van der Vlugt, R. A. A., & Roenhorst, J. W. (2003). High similarity between isolates of Pepino mosaic virus suggests a common origin. European Journal of Plant Pathology, 109, 419–425. es_ES


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