- -

Phylodynamics of Pepino mosaic virus in Spain

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Phylodynamics of Pepino mosaic virus in Spain

Mostrar el registro completo del ítem

Gomez, P.; Sempere, R.; Aranda, M.; Elena Fito, SF. (2012). Phylodynamics of Pepino mosaic virus in Spain. European Journal of Plant Pathology. 134(3):445-449. https://doi.org/10.1007/s10658-012-0019-0

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/70544

Ficheros en el ítem

Metadatos del ítem

Título: Phylodynamics of Pepino mosaic virus in Spain
Autor: Gomez, P. Sempere, R.N. Aranda, M.A. Elena Fito, Santiago Fco
Entidad UPV: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Fecha difusión:
Resumen:
[EN] Pepino mosaic virus (PepMV) is an emerging pathogen that causes severe economic losses in tomato crops in the Northern hemisphere. After its first identification, the new viral strain PepMV-CH2 has been isolated in ...[+]
Palabras clave: Evolutionary dynamics , Molecular epidemiology , PepMV , Rate of molecular evolution , Tomato disease , Virus evolution
Derechos de uso: Cerrado
Fuente:
European Journal of Plant Pathology. (issn: 0929-1873 )
DOI: 10.1007/s10658-012-0019-0
Editorial:
Springer Verlag (Germany)
Versión del editor: http://dx.doi.org/10.1007/s10658-012-0019-0
Código del Proyecto:
info:eu-repo/grantAgreement/MICINN//EUI2009-04009/ES/IDENTIFICATION OF NEW PLANT SUSCEPTIBILITY FACTORS WHOSE MODIFICATION WOULD CONFER VIRUS RESISTANCE/
info:eu-repo/grantAgreement/MICINN//BFU2009-06993/ES/Biologia Evolutiva Y De Sistemas De La Emergencia De Fitovirus De Rna/
Agradecimientos:
We thank an anonymous reviewer for very insightful comments. Work in Murcia was supported by grant EUI2009-04009 (PLANT-KBBE2009 program, Ministerio de Ciencia e Innovacion, Spain). Work in Valencia was supported by grant ...[+]
Tipo: Artículo

References

Adams, M. J., Antoniw, J. F., Bar-Joseph, M., Brunt, A. A., Candresse, T., Foster, G. D., Martelli, G. P., Milne, R. G., Zavriev, S. K., & Fauquet, C. M. (2004). The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Archives of Virology, 149, 1045–1060.

Aguilar, J. M., Hernandez-Gallarod, M. D., Cenis, J. L., Lacasa, A., & Aranda, M. A. (2002). Complete sequence of the Pepino mosaic virus RNA genome. Archives of Virology, 147, 2009–2015.

Alfaro-Fernández, A., Sánchez-Navarro, J., Cebrián, M. D., Córdoba-Sellés, M. D., Pallás, V., & Jordá, C. (2009). Simultaneous detection and identification of Pepino mosaic virus (PepMV) isolates by multiplex one-step RT-PCR. European Journal of Plant Pathology, 125, 143–158. [+]
Adams, M. J., Antoniw, J. F., Bar-Joseph, M., Brunt, A. A., Candresse, T., Foster, G. D., Martelli, G. P., Milne, R. G., Zavriev, S. K., & Fauquet, C. M. (2004). The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Archives of Virology, 149, 1045–1060.

Aguilar, J. M., Hernandez-Gallarod, M. D., Cenis, J. L., Lacasa, A., & Aranda, M. A. (2002). Complete sequence of the Pepino mosaic virus RNA genome. Archives of Virology, 147, 2009–2015.

Alfaro-Fernández, A., Sánchez-Navarro, J., Cebrián, M. D., Córdoba-Sellés, M. D., Pallás, V., & Jordá, C. (2009). Simultaneous detection and identification of Pepino mosaic virus (PepMV) isolates by multiplex one-step RT-PCR. European Journal of Plant Pathology, 125, 143–158.

Cotillon, A. C., Girard, M., & Ducouret, S. (2002). Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV). Archives of Virology, 147, 2231–2238.

De la Iglesia, F., Martínez, F., Hillung, J., Cuevas, J. M., Gerrish, P. J., Daròs, J. A., & Elena, S. F. (2012). Luria-Delbrück estimation of Turnip mosaic virus mutation rate in vivo. Journal of Virology, 86, 3386–3388.

Drummond, A., & Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.

Drummond, A. J., Rambaut, A., Shapiro, B., & Pybus, O. G. (2005). Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution, 22, 1185–1192.

Drummond, A. J., Ho, S. Y. W., Phillips, M. J., & Rambaut, A. (2006). Relaxed phylogenetics and dating with confidence. PLoS Biology, 4, 699–710.

Duffy, S., & Holmes, E. C. (2008). Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of Virology, 82, 957–965.

Duffy, S., Shackelton, L., & Holmes, E. C. (2008). Rates of evolutionary change in viruses: Patterns and determinants. Nature Reviews Genetics, 9, 267–276.

EPPO (2009). EPPO alert list-viruses. Pepino mosaic potexvirus—a new virus of tomato introduced into Europe. www.eppo.org/QUARANTINE/Alert_List/alert_list.htm .

Fargette, D., Pinel, A., Rakotomalala, M., Sangu, E., Traore, O., Sereme, D., Sorho, F., Issaka, S., Hebrard, E., Sere, Y., Kanyeka, Z., & Konate, G. (2008). Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most RNA animal viruses. Journal of Virology, 82, 3584–3589.

Gibbs, A. J., Ohshima, K., Phillips, M. J., & Gibbs, M. J. (2008). The prehistory of potyviruses: Their initial radiation was during the dawn of agriculture. PLoS One, 3, e2523.

Gómez, P., Sempere, R. N., Elena, S. F., & Aranda, M. A. (2009). Mixed infections of Pepino mosaic virus strains modulate the evolutionary dynamics of this emergent virus. Journal of Virology, 83, 12378–12387.

Gómez, P., Sempere, R. N., Aranda, M. A. (2012). Pepino mosaic virus and tomato torrado virus: Two emerging viruses affecting tomato crops in the Mediterranean basin. In G. Loebenstein, & H. Lecoq (Eds.), Advances in virus research (pp. 505–532). Academic Press.

Hanssen, I. M., & Thomma, B. (2010). Pepino mosaic virus: A successful pathogen that rapidly evolved from emerging to endemic in tomato crops. Molecular Plant Pathology, 11, 179–189.

Hanssen, I. M., Paeleman, A., Wittemans, L., Goen, K., Lievens, B., Bragard, C., Vanachter, A., & Thomma, B. (2008). Genetic characterization of Pepino mosaic virus isolates from Belgian greenhouse tomatoes reveals genetic recombination. European Journal of Plant Pathology, 121, 131–146.

Hasiów-Jaroszewska, B., Borodynko, N., Jackowiak, P., Figlerowicz, M., & Pospieszny, H. (2010). Pepino mosaic virus—a pathogen of tomato crops in Poland: Biology, evolution and diagnostics. Journal of Plant Protection Research, 50, 470–476.

Jones, R. A. C., Koenig, R., & Lesemann, D. E. (1980). Pepino mosaic virus, a new potexvirus from pepino (Solanum muricantum). Annals of Applied Biology, 94, 61–68.

Ling, K. S., Wintermantel, W. M., & Bledsoe, M. (2008). Genetic composition of Pepino mosaic virus population in North American greenhouse tomatoes. Plant Disease, 92, 1683–1688.

Malpica, J. M., Fraile, A., Moreno, I., Obies, C. I., Drake, J. W., & García-Arenal, F. (2002). The rate and character of spontaneous mutation in an RNA virus. Genetics, 162, 1505–1511.

Martin, D. P., Lemey, P., Lott, M., Moulton, V., Posada, D., & Lefeuvre, P. (2010). RDP3: A flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462–2463.

Mumford, R. A., & Metcalfe, E. J. (2001). The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru. Archives of Virology, 146, 2455–2460.

Pagán, I., Cordoba-Selles, M., Martínez-Priego, L., Fraile, A., Malpica, J., Jordá, C., & García-Arenal, F. (2006). Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain. Phytopathology, 96, 274–279.

Sanjuán, R. (2012). From molecular genetics to phylodynamics: Evolutionary relevance of mutation rates across viruses. PLoS Pathogens, 8, e1002685.

Sanjuán, R., Agudelo-Romero, P., & Elena, S. F. (2009). Upper-limit mutation rate estimation for a plant RNA virus. Biology Letters, 5, 394–396.

Simmons, H. E., Holmes, E. C., & Stephenson, A. G. (2008). Rapid evolutionary dynamics of Zucchini yellow mosaic virus. Journal of General Virology, 89, 1081–1085.

Tamura, K., & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512–526.

Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731–2739.

Tromas, N., & Elena, S. F. (2010). The rate and spectrum of spontaneous mutations in a plant RNA virus. Genetics, 185, 983–989.

Van der Vlugt, R. A., Stijger, C. M., Verhoeven, J. T. J., & Lesemann, D. E. (2000). First report of Pepino mosaic virus on tomato. Plant Disease, 84, 103–103.

Verhoeven, J. T. J., Van der Vlugt, R. A. A., & Roenhorst, J. W. (2003). High similarity between isolates of Pepino mosaic virus suggests a common origin. European Journal of Plant Pathology, 109, 419–425.

[-]

recommendations

 

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro completo del ítem