- -

Deciphering dynamic dose responses of natural promoters and single cis elements upon osmotic and oxidative stress in yeast

RiuNet: Repositorio Institucional de la Universidad Politécnica de Valencia

Compartir/Enviar a

Citas

Estadísticas

  • Estadisticas de Uso

Deciphering dynamic dose responses of natural promoters and single cis elements upon osmotic and oxidative stress in yeast

Mostrar el registro sencillo del ítem

Ficheros en el ítem

dc.contributor.author Dolz Edo, Laura es_ES
dc.contributor.author Rienzo, Alessandro es_ES
dc.contributor.author Poveda Huertes, Daniel es_ES
dc.contributor.author Pascual-Ahuir Giner, María Desamparados es_ES
dc.contributor.author Proft, Markus Hans es_ES
dc.date.accessioned 2017-03-13T10:48:27Z
dc.date.available 2017-03-13T10:48:27Z
dc.date.issued 2013-06
dc.identifier.issn 0270-7306
dc.identifier.uri http://hdl.handle.net/10251/78701
dc.description.abstract [EN] Fine-tuned activation of gene expression in response to stress is the result of dynamic interactions of transcription factors with specific promoter binding sites. In the study described here we used a time-resolved luciferase reporter assay in living Saccharomyces cerevisiae yeast cells to gain insights into how osmotic and oxidative stress signals modulate gene expression in a dose-sensitive manner. Specifically, the dose-response behavior of four different natural promoters (GRE2, CTT1, SOD2, and CCP1) reveals differences in their sensitivity and dynamics in response to different salt and oxidative stimuli. Characteristic dose-response profiles were also obtained for artificial promoters driven by only one type of stress-regulated consensus element, such as the cyclic AMP-responsive element, stress response element, or AP-1 site. Oxidative and osmotic stress signals activate these elements separately and with different sensitivities through different signaling molecules. Combination of stress-activated cis elements does not, in general, enhance the absolute expression levels; however, specific combinations can increase the inducibility of the promoter in response to different stress doses. Finally, we show that the stress tolerance of the cell critically modulates the dynamics of its transcriptional response in the case of oxidative stress. es_ES
dc.description.sponsorship This work was supported by the Ministerio de Economa y Competitividad (grant BFU2011-23326 to M.P.) and the Ministerio de Ciencia e Innovacion (predoctoral FPI grant to A.R.).
dc.language Inglés es_ES
dc.publisher American Society for Microbiology es_ES
dc.relation.ispartof Molecular and Cellular Biology es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Activated protein-kinase es_ES
dc.subject RNA POL-II es_ES
dc.subject Saccharomyces cerevisiae es_ES
dc.subject Gene expression es_ES
dc.subject Nuclear localization es_ES
dc.subject Transcription factor es_ES
dc.subject MAP kinase es_ES
dc.subject Environmental changes es_ES
dc.subject Histone Deacetylase es_ES
dc.subject Signaling pathways es_ES
dc.subject.classification BIOQUIMICA Y BIOLOGIA MOLECULAR es_ES
dc.title Deciphering dynamic dose responses of natural promoters and single cis elements upon osmotic and oxidative stress in yeast es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1128/MCB.00240-13
dc.relation.projectID info:eu-repo/grantAgreement/MICINN//BFU2011-23326/ES/REGULACION DE LA CROMATINA Y DE LA ESTRUCTURA MITOCONDRIAL EN RESPUESTA A ESTRES OSMOTICO/ es_ES
dc.rights.accessRights Abierto es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.contributor.affiliation Universitat Politècnica de València. Escuela Técnica Superior de Ingeniería Agronómica y del Medio Natural - Escola Tècnica Superior d'Enginyeria Agronòmica i del Medi Natural es_ES
dc.description.bibliographicCitation Dolz Edo, L.; Rienzo, A.; Poveda Huertes, D.; Pascual-Ahuir Giner, MD.; Proft, MH. (2013). Deciphering dynamic dose responses of natural promoters and single cis elements upon osmotic and oxidative stress in yeast. Molecular and Cellular Biology. 33(11):2228-2240. https://doi.org/10.1128/MCB.00240-13 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/10.1128/MCB.00240-13 es_ES
dc.description.upvformatpinicio 2228 es_ES
dc.description.upvformatpfin 2240 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 33 es_ES
dc.description.issue 11 es_ES
dc.relation.senia 259431 es_ES
dc.identifier.pmid 23530054
dc.identifier.pmcid PMC3648068 en_EN
dc.contributor.funder Ministerio de Ciencia e Innovación
dc.description.references Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., … Brown, P. O. (2000). Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes. Molecular Biology of the Cell, 11(12), 4241-4257. doi:10.1091/mbc.11.12.4241 es_ES
dc.description.references Ni, L., Bruce, C., Hart, C., Leigh-Bell, J., Gelperin, D., Umansky, L., … Snyder, M. (2009). Dynamic and complex transcription factor binding during an inducible response in yeast. Genes & Development, 23(11), 1351-1363. doi:10.1101/gad.1781909 es_ES
dc.description.references Posas, F., Chambers, J. R., Heyman, J. A., Hoeffler, J. P., de Nadal, E., & Ariño, J. (2000). The Transcriptional Response of Yeast to Saline Stress. Journal of Biological Chemistry, 275(23), 17249-17255. doi:10.1074/jbc.m910016199 es_ES
dc.description.references Rep, M., Krantz, M., Thevelein, J. M., & Hohmann, S. (2000). The Transcriptional Response ofSaccharomyces cerevisiaeto Osmotic Shock. Journal of Biological Chemistry, 275(12), 8290-8300. doi:10.1074/jbc.275.12.8290 es_ES
dc.description.references Yale, J., & Bohnert, H. J. (2001). Transcript Expression inSaccharomyces cerevisiaeat High Salinity. Journal of Biological Chemistry, 276(19), 15996-16007. doi:10.1074/jbc.m008209200 es_ES
dc.description.references Causton, H. C., Ren, B., Koh, S. S., Harbison, C. T., Kanin, E., Jennings, E. G., … Young, R. A. (2001). Remodeling of Yeast Genome Expression in Response to Environmental Changes. Molecular Biology of the Cell, 12(2), 323-337. doi:10.1091/mbc.12.2.323 es_ES
dc.description.references Martínez-Pastor, M. T., Marchler, G., Schüller, C., Marchler-Bauer, A., Ruis, H., & Estruch, F. (1996). The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). The EMBO Journal, 15(9), 2227-2235. doi:10.1002/j.1460-2075.1996.tb00576.x es_ES
dc.description.references Schmitt, A. P., & McEntee, K. (1996). Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences, 93(12), 5777-5782. doi:10.1073/pnas.93.12.5777 es_ES
dc.description.references Beck, T., & Hall, M. N. (1999). The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature, 402(6762), 689-692. doi:10.1038/45287 es_ES
dc.description.references Gorner, W., Durchschlag, E., Martinez-Pastor, M. T., Estruch, F., Ammerer, G., Hamilton, B., … Schuller, C. (1998). Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. Genes & Development, 12(4), 586-597. doi:10.1101/gad.12.4.586 es_ES
dc.description.references Saito, H., & Posas, F. (2012). Response to Hyperosmotic Stress. Genetics, 192(2), 289-318. doi:10.1534/genetics.112.140863 es_ES
dc.description.references De Nadal, E., Ammerer, G., & Posas, F. (2011). Controlling gene expression in response to stress. Nature Reviews Genetics, 12(12), 833-845. doi:10.1038/nrg3055 es_ES
dc.description.references Martínez-Montañés, F., Pascual-Ahuir, A., & Proft, M. (2010). Toward a Genomic View of the Gene Expression Program Regulated by Osmostress in Yeast. OMICS: A Journal of Integrative Biology, 14(6), 619-627. doi:10.1089/omi.2010.0046 es_ES
dc.description.references Alepuz, P. M. (2003). Osmostress-induced transcription by Hot1 depends on a Hog1-mediated recruitment of the RNA Pol II. The EMBO Journal, 22(10), 2433-2442. doi:10.1093/emboj/cdg243 es_ES
dc.description.references Nadal, E. d., Casadome, L., & Posas, F. (2003). Targeting the MEF2-Like Transcription Factor Smp1 by the Stress-Activated Hog1 Mitogen-Activated Protein Kinase. Molecular and Cellular Biology, 23(1), 229-237. doi:10.1128/mcb.23.1.229-237.2003 es_ES
dc.description.references Proft, M. (2001). Regulation of the Sko1 transcriptional repressor by the Hog1 MAP kinase in response to osmotic stress. The EMBO Journal, 20(5), 1123-1133. doi:10.1093/emboj/20.5.1123 es_ES
dc.description.references Proft, M., & Serrano, R. (1999). Repressors and Upstream Repressing Sequences of the Stress-RegulatedENA1Gene inSaccharomyces cerevisiae: bZIP Protein Sko1p Confers HOG-Dependent Osmotic Regulation. Molecular and Cellular Biology, 19(1), 537-546. doi:10.1128/mcb.19.1.537 es_ES
dc.description.references Rep, M., Reiser, V., Gartner, U., Thevelein, J. M., Hohmann, S., Ammerer, G., & Ruis, H. (1999). Osmotic Stress-Induced Gene Expression inSaccharomyces cerevisiaeRequires Msn1p and the Novel Nuclear Factor Hot1p. Molecular and Cellular Biology, 19(8), 5474-5485. doi:10.1128/mcb.19.8.5474 es_ES
dc.description.references Ruiz-Roig, C., Noriega, N., Duch, A., Posas, F., & de Nadal, E. (2012). The Hog1 SAPK controls the Rtg1/Rtg3 transcriptional complex activity by multiple regulatory mechanisms. Molecular Biology of the Cell, 23(21), 4286-4296. doi:10.1091/mbc.e12-04-0289 es_ES
dc.description.references Vendrell, A., Martínez-Pastor, M., González-Novo, A., Pascual-Ahuir, A., Sinclair, D. A., Proft, M., & Posas, F. (2011). Sir2 histone deacetylase prevents programmed cell death caused by sustained activation of the Hog1 stress-activated protein kinase. EMBO reports, 12(10), 1062-1068. doi:10.1038/embor.2011.154 es_ES
dc.description.references De Nadal, E., Zapater, M., Alepuz, P. M., Sumoy, L., Mas, G., & Posas, F. (2004). The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. Nature, 427(6972), 370-374. doi:10.1038/nature02258 es_ES
dc.description.references Proft, M., & Struhl, K. (2002). Hog1 Kinase Converts the Sko1-Cyc8-Tup1 Repressor Complex into an Activator that Recruits SAGA and SWI/SNF in Response to Osmotic Stress. Molecular Cell, 9(6), 1307-1317. doi:10.1016/s1097-2765(02)00557-9 es_ES
dc.description.references Zapater, M., Sohrmann, M., Peter, M., Posas, F., & de Nadal, E. (2007). Selective Requirement for SAGA in Hog1-Mediated Gene Expression Depending on the Severity of the External Osmostress Conditions. Molecular and Cellular Biology, 27(11), 3900-3910. doi:10.1128/mcb.00089-07 es_ES
dc.description.references Capaldi, A. P., Kaplan, T., Liu, Y., Habib, N., Regev, A., Friedman, N., & O’Shea, E. K. (2008). Structure and function of a transcriptional network activated by the MAPK Hog1. Nature Genetics, 40(11), 1300-1306. doi:10.1038/ng.235 es_ES
dc.description.references Cook, K. E., & O’Shea, E. K. (2012). Hog1 Controls Global Reallocation of RNA Pol II upon Osmotic Shock in Saccharomyces cerevisiae. G3: Genes|Genomes|Genetics, 2(9), 1129-1136. doi:10.1534/g3.112.003251 es_ES
dc.description.references Proft, M., Gibbons, F. D., Copeland, M., Roth, F. P., & Struhl, K. (2005). Genomewide Identification of Sko1 Target Promoters Reveals a Regulatory Network That Operates in Response to Osmotic Stress inSaccharomyces cerevisiae. Eukaryotic Cell, 4(8), 1343-1352. doi:10.1128/ec.4.8.1343-1352.2005 es_ES
dc.description.references Vincent, A. C., & Struhl, K. (1992). ACR1, a yeast ATF/CREB repressor. Molecular and Cellular Biology, 12(12), 5394-5405. doi:10.1128/mcb.12.12.5394 es_ES
dc.description.references Wong, K. H., & Struhl, K. (2011). The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein. Genes & Development, 25(23), 2525-2539. doi:10.1101/gad.179275.111 es_ES
dc.description.references Ikner, A., & Shiozaki, K. (2005). Yeast signaling pathways in the oxidative stress response. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 569(1-2), 13-27. doi:10.1016/j.mrfmmm.2004.09.006 es_ES
dc.description.references Temple, M. D., Perrone, G. G., & Dawes, I. W. (2005). Complex cellular responses to reactive oxygen species. Trends in Cell Biology, 15(6), 319-326. doi:10.1016/j.tcb.2005.04.003 es_ES
dc.description.references Toone, W. M., & Jones, N. (1999). AP-1 transcription factors in yeast. Current Opinion in Genetics & Development, 9(1), 55-61. doi:10.1016/s0959-437x(99)80008-2 es_ES
dc.description.references Brombacher, K., Fischer, B. B., Rüfenacht, K., & Eggen, R. I. L. (2006). The role of Yap1p and Skn7p-mediated oxidative stress response in the defence ofSaccharomyces cerevisiae against singlet oxygen. Yeast, 23(10), 741-750. doi:10.1002/yea.1392 es_ES
dc.description.references Lee, J., Godon, C., Lagniel, G., Spector, D., Garin, J., Labarre, J., & Toledano, M. B. (1999). Yap1 and Skn7 Control Two Specialized Oxidative Stress Response Regulons in Yeast. Journal of Biological Chemistry, 274(23), 16040-16046. doi:10.1074/jbc.274.23.16040 es_ES
dc.description.references Fernandes, L., Rodrigues-Pousada, C., & Struhl, K. (1997). Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions. Molecular and Cellular Biology, 17(12), 6982-6993. doi:10.1128/mcb.17.12.6982 es_ES
dc.description.references Gulshan, K., Rovinsky, S. A., Coleman, S. T., & Moye-Rowley, W. S. (2005). Oxidant-specific Folding of Yap1p Regulates Both Transcriptional Activation and Nuclear Localization. Journal of Biological Chemistry, 280(49), 40524-40533. doi:10.1074/jbc.m504716200 es_ES
dc.description.references Kuge, S. (1997). Regulation of yAP-1 nuclear localization in response to oxidative stress. The EMBO Journal, 16(7), 1710-1720. doi:10.1093/emboj/16.7.1710 es_ES
dc.description.references Delaunay, A., Isnard, A.-D., & Toledano, M. B. (2000). H2O2 sensing through oxidation of the Yap1 transcription factor. The EMBO Journal, 19(19), 5157-5166. doi:10.1093/emboj/19.19.5157 es_ES
dc.description.references Kuge, S., Arita, M., Murayama, A., Maeta, K., Izawa, S., Inoue, Y., & Nomoto, A. (2001). Regulation of the Yeast Yap1p Nuclear Export Signal Is Mediated by Redox Signal-Induced Reversible Disulfide Bond Formation. Molecular and Cellular Biology, 21(18), 6139-6150. doi:10.1128/mcb.21.18.6139-6150.2001 es_ES
dc.description.references Koziol, S., Zagulski, M., Bilinski, T., & Bartosz, G. (2005). Antioxidants protect the yeastSaccharomyces cerevisiaeagainst hypertonic stress. Free Radical Research, 39(4), 365-371. doi:10.1080/10715760500045855 es_ES
dc.description.references Bilsland, E., Molin, C., Swaminathan, S., Ramne, A., & Sunnerhagen, P. (2004). Rck1 and Rck2 MAPKAP kinases and the HOG pathway are required for oxidative stress resistance. Molecular Microbiology, 53(6), 1743-1756. doi:10.1111/j.1365-2958.2004.04238.x es_ES
dc.description.references Rienzo, A., Pascual-Ahuir, A., & Proft, M. (2012). The use of a real-time luciferase assay to quantify gene expression dynamics in the living yeast cell. Yeast, 29(6), 219-231. doi:10.1002/yea.2905 es_ES
dc.description.references Baker Brachmann, C., Davies, A., Cost, G. J., Caputo, E., Li, J., Hieter, P., & Boeke, J. D. (1998). Designer deletion strains derived fromSaccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast, 14(2), 115-132. doi:10.1002/(sici)1097-0061(19980130)14:2<115::aid-yea204>3.0.co;2-2 es_ES
dc.description.references Winzeler, E. A. (1999). Functional Characterization of the S.&nbsp;cerevisiae Genome by Gene Deletion and Parallel Analysis. Science, 285(5429), 901-906. doi:10.1126/science.285.5429.901 es_ES
dc.description.references Galiazzo, F., & Labbe-Bois, R. (1993). Regulation of Cu,Zn- and Mn-superoxide dismutase transcription in Saccharomyces cerevisiae. FEBS Letters, 315(2), 197-200. doi:10.1016/0014-5793(93)81162-s es_ES
dc.description.references Garay-Arroyo, A., & Covarrubias, A. A. (1999). Three genes whose expression is induced by stress inSaccharomyces cerevisiae. Yeast, 15(10A), 879-892. doi:10.1002/(sici)1097-0061(199907)15:10a<879::aid-yea428>3.0.co;2-q es_ES
dc.description.references Kwon, M. (2003). Oxidative stresses elevate the expression of cytochrome c peroxidase in Saccharomyces cerevisiae. Biochimica et Biophysica Acta (BBA) - General Subjects, 1623(1), 1-5. doi:10.1016/s0304-4165(03)00151-x es_ES
dc.description.references Pascual-Ahuir, A., Posas, F., Serrano, R., & Proft, M. (2001). Multiple Levels of Control Regulate the Yeast cAMP-response Element-binding Protein Repressor Sko1p in Response to Stress. Journal of Biological Chemistry, 276(40), 37373-37378. doi:10.1074/jbc.m105755200 es_ES
dc.description.references Schüller, C., Brewster, J. L., Alexander, M. R., Gustin, M. C., & Ruis, H. (1994). The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene. The EMBO Journal, 13(18), 4382-4389. doi:10.1002/j.1460-2075.1994.tb06758.x es_ES
dc.description.references Aguilera, J., & Prieto, J. (2001). The Saccharomyces cerevisiae aldose reductase is implied in the metabolism of methylglyoxal in response to stress conditions. Current Genetics, 39(5-6), 273-283. doi:10.1007/s002940100213 es_ES
dc.description.references Aguilera, J., Rodríguez-Vargas, S., & Prieto, J. A. (2005). The HOG MAP kinase pathway is required for the induction of methylglyoxal-responsive genes and determines methylglyoxal resistance in Saccharomyces cerevisiae. Molecular Microbiology, 56(1), 228-239. doi:10.1111/j.1365-2958.2005.04533.x es_ES
dc.description.references Azevedo, D., Tacnet, F., Delaunay, A., Rodrigues-Pousada, C., & Toledano, M. B. (2003). Two redox centers within Yap1 for H2O2 and thiol-reactive chemicals signaling. Free Radical Biology and Medicine, 35(8), 889-900. doi:10.1016/s0891-5849(03)00434-9 es_ES
dc.description.references Proft, M., & Struhl, K. (2004). MAP Kinase-Mediated Stress Relief that Precedes and Regulates the Timing of Transcriptional Induction. Cell, 118(3), 351-361. doi:10.1016/j.cell.2004.07.016 es_ES
dc.description.references Rep, M., Albertyn, J., Thevelein, J. M., Prior, B. A., & Hohmann, S. (1999). Different signalling pathways contribute to the control of GPD1 gene expression by osmotic stress in Saccharomyces cerevisiae. Microbiology, 145(3), 715-727. doi:10.1099/13500872-145-3-715 es_ES


Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem