- -

Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange

RiuNet: Institutional repository of the Polithecnic University of Valencia

Share/Send to

Cited by

Statistics

  • Estadisticas de Uso

Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange

Show full item record

Galipienso-Torregrosa, L.; Martínez, C.; Wilemsen, A.; Alfaro Fernández, AO.; Font San Ambrosio, MI.; Davino, S.; Rubio, L. (2015). Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange. Archives of Virology. 160(10):2611-2616. https://doi.org/10.1007/s00705-015-2550-8

Por favor, use este identificador para citar o enlazar este ítem: http://hdl.handle.net/10251/82641

Files in this item

Item Metadata

Title: Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange
Author: Galipienso-Torregrosa, Luis Martínez, Carolina Wilemsen, Anouk Alfaro Fernández, Ana Olvido Font San Ambrosio, Maria Isabel Davino, Salvatore Rubio, Luis
UPV Unit: Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes
Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani
Universitat Politècnica de València. Escuela Técnica Superior de Ingeniería Agronómica y del Medio Natural - Escola Tècnica Superior d'Enginyeria Agronòmica i del Medi Natural
Issued date:
Abstract:
[EN] The genetic variability and evolution of parietaria mottle virus (PMoV) of the genus Ilarvirus was studied by analyzing nucleotide sequences of 2b and CP genes from isolates collected in different countries. Phylogenetic ...[+]
Subjects: Population genetics , Mosaic virus , Coat protein , RNA viruses , Movement , Sequence , Rates , Recombination , Origins , Tomato
Copyrigths: Cerrado
Source:
Archives of Virology. (issn: 0304-8608 ) (eissn: 1432-8798 )
DOI: 10.1007/s00705-015-2550-8
Publisher:
Springer Verlag (Germany)
Publisher version: http://dx.doi.org/ 10.1007/s00705-015-2550-8
Project ID:
info:eu-repo/grantAgreement/MEC//RTA2006-00024-C02-01/ES/Epidemiología y Caracterización biológica y molecular de la raza que infecta tomate del viris del moteado de la parietaria (PMoV-T)./
Thanks:
This work was supported in part by the INIA project RTA2006-00024-C02-01. We thank Dr. C. Varvery (BPI, Kiphissia, Athens, Greece) and Dr. A.M. Vaira (IVV-CNR, Torino, Italy), Dionisio Berra (Laboratorio de Sanidad Vegetal ...[+]
Type: Artículo

References

Aparicio F, Myrta A, Di Terlizzi B, Pallás V (1999) Molecular variability among isolates of prunus necrotic ringspot virus from different Prunus spp. Phytopathology 89:991–999

Aparicio F, Vilar M, Perez-Payá E, Pallás V (2003) The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA. Virology 313:213–223

Aramburu J, Galipienso L, Aparicio F, Soler S, López C (2010) Mode of transmission of parietaria mottle virus. J Plant Pathol 92:679–684 [+]
Aparicio F, Myrta A, Di Terlizzi B, Pallás V (1999) Molecular variability among isolates of prunus necrotic ringspot virus from different Prunus spp. Phytopathology 89:991–999

Aparicio F, Vilar M, Perez-Payá E, Pallás V (2003) The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA. Virology 313:213–223

Aramburu J, Galipienso L, Aparicio F, Soler S, López C (2010) Mode of transmission of parietaria mottle virus. J Plant Pathol 92:679–684

Aramburu J (2001) First report of parietaria mottle virus on tomato in Spain. Plant Dis 85:1210

Barone M, Malfitano M, Duran-Vila N, Alioto D (2010) Genetic variability of the coat protein gene of isolates of citrus variegation virus from Campania (southern Italy). Phytopathol Mediterr 48:469–474

Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW, Baulcombe DC (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J 17:6739–6746

Caciagli P, Boccardo G, Lovisolo O (1989) Parietaria mottle virus, a possible new ilarvirus from Parietaria officinalis (Urticaceae). Plant Pathol 38:577–584

Ding SW, Li WX, Symons RH (1995) A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement. EMBO J 14:5762–5772

Drake JW, Holland JJ (1999) Mutation rates among RNA viruses. Proc Natl Acad Sci 96:13910–13913

Drummond A, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214

Galipienso L, Rubio L, López C, Soler S, Aramburu J (2009) Complete nucleotide sequence of a Spanish isolate of parietaria mottle virus infecting tomato. Virus Genes 39:256–260

Galipienso L, del Carmen Herranz M, López C, Pallás V, Aramburu J (2008) Sequence analysis within the RNA 3 of seven Spanish tomato isolates of parietaria mottle virus (PMoV-T) reveals important structural differences with the parietaria isolates (PMoV). Eur J Plant Pathol 120:125–135

García-Arenal F, Fraile A, Malpica JM (2001) Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39:157–186

Ge X, Scott S (1996) The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus. Virus Res 40:57–63

Herranz M, Al Rwahnih M, Sánchez-Navarro J, Elena S, Choueiri E, Myrta A, Pallás V (2008) Low genetic variability in the coat and movement proteins of American plum line pattern virus isolates from different geographic origins. Arch Virol 153:367–373

Janssen D, Sáez E, Segundo E, Martín G, Gil F, Cuadrado I (2005) Capsicum annuum—a new host of parietaria mottle virus in Spain. Plant Pathol 54:567

Kalinowska E, Mroczkowska K, Paduch-Cichal E, Chodorska M (2014) Genetic variability among coat protein of prune dwarf virus variants from different countries and different Prunus species. Eur J Plant Pathol 140:863–868

Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948

Lin HX, Rubio L, Smythe AB, Falk BW (2004) Molecular population genetics of cucumber mosaic virus in California: evidence for founder effects and reassortment. J Virol 78:6666

Lisa V, Ramasso E, Ciuffo M, Roggero P (1998) Tomato apical necrosis caused by a strain of parietaria mottle ilarvirus. In: Proceedings of the 9th conference of the International Society for Horticultural Science, Torino, pp 3–5

Marchoux G, Parrella G, Gebre-Selassie Gognalons P (1999) Identification de deux ilarvirus sur tomate dans le sud de la France. Phytoma-La Défense des végétaux 522:53–55

Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463

Martínez C, Coll-Bonfill N, Aramburu J, Pallás V, Aparicio F, Galipienso L (2014) Two basic (hydrophilic) regions in the movement protein of parietaria mottle virus have RNA binding activity and are required for cell-to-cell transport. Virus Res 184:54–61

Moya A, Holmes EC, González-Candelas F (2004) The population genetics and evolutionary epidemiology of RNA viruses. Nat Rev Microbiol 2:279–288

Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Pond SLK, Scheffler K (2013) FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol 30:1196–1205

Nagy PD (2008) Recombination in plant RNA viruses. Plant virus evolution. Springer, Berlin, pp 133–164

Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol Biol Evol 10:271–281

Pond SLK, Posada D, Gravenor MB, Woelk CH, Frost SDW (2006) GARD: a genetic algorithm for recombination detection. Bioinformatics 22:3096–3098

Pond SLK, Frost SDW (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531–2533

Roggero P, Ciuffo M, Katis N, Alioto D, Crescenzi A, Parrella G, Gallitelli D (2000) Necrotic disease in tomatoes in Greece and southern Italy caused by the tomato strain of parietaria mottle virus. J Plant Pathol 82:159

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

Scott S, Zimmerman M, Rankin D (2006) Complete sequence of the RNA 1 and RNA 2 of parietaria mottle virus. Arch Virol 151:1895–1898

Shimura H, Masuta C, Yoshida N, Sueda K, Suzuki M (2013) The 2b protein of asparagus virus functions as an RNA silencing suppressor against systemic silencing to prove functional synteny with related cucumoviruses. Virology 442:180–188

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725–2729

Vives MC, Rubio L, Galipienso L, Navarro L, Moreno P, Guerri J (2002) Low genetic variation between isolates of citrus leaf blotch virus from different host species and of different geographical origins. J Gen Virol 83:2587–2591

[-]

recommendations

 

This item appears in the following Collection(s)

Show full item record