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Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange

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Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange

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dc.contributor.author Galipienso-Torregrosa, Luis es_ES
dc.contributor.author Martínez, Carolina es_ES
dc.contributor.author Wilemsen, Anouk es_ES
dc.contributor.author Alfaro Fernández, Ana Olvido es_ES
dc.contributor.author Font San Ambrosio, Maria Isabel es_ES
dc.contributor.author Davino, Salvatore es_ES
dc.contributor.author Rubio, Luis es_ES
dc.date.accessioned 2017-06-09T10:35:25Z
dc.date.available 2017-06-09T10:35:25Z
dc.date.issued 2015-10
dc.identifier.issn 0304-8608
dc.identifier.uri http://hdl.handle.net/10251/82641
dc.description.abstract [EN] The genetic variability and evolution of parietaria mottle virus (PMoV) of the genus Ilarvirus was studied by analyzing nucleotide sequences of 2b and CP genes from isolates collected in different countries. Phylogenetic analysis showed that PMoV isolates clustered in different clades: one (clade I) composed of only Italian isolates and three clades (clades II-IV) including the Spanish isolates. The Greek isolate GrT-1 used in this study was in clade IV for the CP phylogenetic tree whereas it formed a separate branch in the 2b phylogenetic tree. The nucleotide sequence diversity of both the 2b and CP genes was low (0.062 +/- A 0.006 and 0.063 +/- A 0.006 for 2b and CP, respectively) but higher than those of other ilarviruses. Distribution of synonymous and nonsynonymous substitutions revealed that 2b and CP proteins are under purifying selection, with some positions under diversifying selection. Genetic exchange among Spanish isolates was also detected. es_ES
dc.description.sponsorship This work was supported in part by the INIA project RTA2006-00024-C02-01. We thank Dr. C. Varvery (BPI, Kiphissia, Athens, Greece) and Dr. A.M. Vaira (IVV-CNR, Torino, Italy), Dionisio Berra (Laboratorio de Sanidad Vegetal de Guipuzkoa, Spain), Egoitz Mendia (Laboratorio de Sanidad Vegetal de Vizkaia, Spain), Diego Olmos (Laboratorio de Sanidad Vegetal de Baleares, Spain) and Teodora Tornos (Laboratorio de Sanidad Vegetal de Cataluna, Spain) for providing PMoV isolates. We thank Dr. Leonardo Velasco and Nuria Duran for excellent revision of this manuscript. en_EN
dc.language Inglés es_ES
dc.publisher Springer Verlag (Germany) es_ES
dc.relation.ispartof Archives of Virology es_ES
dc.rights Reserva de todos los derechos es_ES
dc.subject Population genetics es_ES
dc.subject Mosaic virus es_ES
dc.subject Coat protein es_ES
dc.subject RNA viruses es_ES
dc.subject Movement es_ES
dc.subject Sequence es_ES
dc.subject Rates es_ES
dc.subject Recombination es_ES
dc.subject Origins es_ES
dc.subject Tomato es_ES
dc.subject.classification PRODUCCION VEGETAL es_ES
dc.subject.classification MICROBIOLOGIA es_ES
dc.title Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange es_ES
dc.type Artículo es_ES
dc.identifier.doi 10.1007/s00705-015-2550-8
dc.relation.projectID info:eu-repo/grantAgreement/MEC//RTA2006-00024-C02-01/ES/Epidemiología y Caracterización biológica y molecular de la raza que infecta tomate del viris del moteado de la parietaria (PMoV-T)./ es_ES
dc.rights.accessRights Cerrado es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes es_ES
dc.contributor.affiliation Universitat Politècnica de València. Instituto Agroforestal Mediterráneo - Institut Agroforestal Mediterrani es_ES
dc.contributor.affiliation Universitat Politècnica de València. Escuela Técnica Superior de Ingeniería Agronómica y del Medio Natural - Escola Tècnica Superior d'Enginyeria Agronòmica i del Medi Natural es_ES
dc.description.bibliographicCitation Galipienso-Torregrosa, L.; Martínez, C.; Wilemsen, A.; Alfaro Fernández, AO.; Font San Ambrosio, MI.; Davino, S.; Rubio, L. (2015). Genetic variability and evolutionary analysis of parietaria mottle virus: role of selection and genetic exchange. Archives of Virology. 160(10):2611-2616. https://doi.org/10.1007/s00705-015-2550-8 es_ES
dc.description.accrualMethod S es_ES
dc.relation.publisherversion http://dx.doi.org/ 10.1007/s00705-015-2550-8 es_ES
dc.description.upvformatpinicio 2611 es_ES
dc.description.upvformatpfin 2616 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion es_ES
dc.description.volume 160 es_ES
dc.description.issue 10 es_ES
dc.relation.senia 308430 es_ES
dc.identifier.eissn 1432-8798
dc.identifier.pmid 26234185
dc.contributor.funder Ministerio de Educación y Ciencia es_ES
dc.description.references Aparicio F, Myrta A, Di Terlizzi B, Pallás V (1999) Molecular variability among isolates of prunus necrotic ringspot virus from different Prunus spp. Phytopathology 89:991–999 es_ES
dc.description.references Aparicio F, Vilar M, Perez-Payá E, Pallás V (2003) The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA. Virology 313:213–223 es_ES
dc.description.references Aramburu J, Galipienso L, Aparicio F, Soler S, López C (2010) Mode of transmission of parietaria mottle virus. J Plant Pathol 92:679–684 es_ES
dc.description.references Aramburu J (2001) First report of parietaria mottle virus on tomato in Spain. Plant Dis 85:1210 es_ES
dc.description.references Barone M, Malfitano M, Duran-Vila N, Alioto D (2010) Genetic variability of the coat protein gene of isolates of citrus variegation virus from Campania (southern Italy). Phytopathol Mediterr 48:469–474 es_ES
dc.description.references Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW, Baulcombe DC (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J 17:6739–6746 es_ES
dc.description.references Caciagli P, Boccardo G, Lovisolo O (1989) Parietaria mottle virus, a possible new ilarvirus from Parietaria officinalis (Urticaceae). Plant Pathol 38:577–584 es_ES
dc.description.references Ding SW, Li WX, Symons RH (1995) A novel naturally occurring hybrid gene encoded by a plant RNA virus facilitates long distance virus movement. EMBO J 14:5762–5772 es_ES
dc.description.references Drake JW, Holland JJ (1999) Mutation rates among RNA viruses. Proc Natl Acad Sci 96:13910–13913 es_ES
dc.description.references Drummond A, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214 es_ES
dc.description.references Galipienso L, Rubio L, López C, Soler S, Aramburu J (2009) Complete nucleotide sequence of a Spanish isolate of parietaria mottle virus infecting tomato. Virus Genes 39:256–260 es_ES
dc.description.references Galipienso L, del Carmen Herranz M, López C, Pallás V, Aramburu J (2008) Sequence analysis within the RNA 3 of seven Spanish tomato isolates of parietaria mottle virus (PMoV-T) reveals important structural differences with the parietaria isolates (PMoV). Eur J Plant Pathol 120:125–135 es_ES
dc.description.references García-Arenal F, Fraile A, Malpica JM (2001) Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39:157–186 es_ES
dc.description.references Ge X, Scott S (1996) The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus. Virus Res 40:57–63 es_ES
dc.description.references Herranz M, Al Rwahnih M, Sánchez-Navarro J, Elena S, Choueiri E, Myrta A, Pallás V (2008) Low genetic variability in the coat and movement proteins of American plum line pattern virus isolates from different geographic origins. Arch Virol 153:367–373 es_ES
dc.description.references Janssen D, Sáez E, Segundo E, Martín G, Gil F, Cuadrado I (2005) Capsicum annuum—a new host of parietaria mottle virus in Spain. Plant Pathol 54:567 es_ES
dc.description.references Kalinowska E, Mroczkowska K, Paduch-Cichal E, Chodorska M (2014) Genetic variability among coat protein of prune dwarf virus variants from different countries and different Prunus species. Eur J Plant Pathol 140:863–868 es_ES
dc.description.references Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 es_ES
dc.description.references Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948 es_ES
dc.description.references Lin HX, Rubio L, Smythe AB, Falk BW (2004) Molecular population genetics of cucumber mosaic virus in California: evidence for founder effects and reassortment. J Virol 78:6666 es_ES
dc.description.references Lisa V, Ramasso E, Ciuffo M, Roggero P (1998) Tomato apical necrosis caused by a strain of parietaria mottle ilarvirus. In: Proceedings of the 9th conference of the International Society for Horticultural Science, Torino, pp 3–5 es_ES
dc.description.references Marchoux G, Parrella G, Gebre-Selassie Gognalons P (1999) Identification de deux ilarvirus sur tomate dans le sud de la France. Phytoma-La Défense des végétaux 522:53–55 es_ES
dc.description.references Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463 es_ES
dc.description.references Martínez C, Coll-Bonfill N, Aramburu J, Pallás V, Aparicio F, Galipienso L (2014) Two basic (hydrophilic) regions in the movement protein of parietaria mottle virus have RNA binding activity and are required for cell-to-cell transport. Virus Res 184:54–61 es_ES
dc.description.references Moya A, Holmes EC, González-Candelas F (2004) The population genetics and evolutionary epidemiology of RNA viruses. Nat Rev Microbiol 2:279–288 es_ES
dc.description.references Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Pond SLK, Scheffler K (2013) FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol 30:1196–1205 es_ES
dc.description.references Nagy PD (2008) Recombination in plant RNA viruses. Plant virus evolution. Springer, Berlin, pp 133–164 es_ES
dc.description.references Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol Biol Evol 10:271–281 es_ES
dc.description.references Pond SLK, Posada D, Gravenor MB, Woelk CH, Frost SDW (2006) GARD: a genetic algorithm for recombination detection. Bioinformatics 22:3096–3098 es_ES
dc.description.references Pond SLK, Frost SDW (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531–2533 es_ES
dc.description.references Roggero P, Ciuffo M, Katis N, Alioto D, Crescenzi A, Parrella G, Gallitelli D (2000) Necrotic disease in tomatoes in Greece and southern Italy caused by the tomato strain of parietaria mottle virus. J Plant Pathol 82:159 es_ES
dc.description.references Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425 es_ES
dc.description.references Scott S, Zimmerman M, Rankin D (2006) Complete sequence of the RNA 1 and RNA 2 of parietaria mottle virus. Arch Virol 151:1895–1898 es_ES
dc.description.references Shimura H, Masuta C, Yoshida N, Sueda K, Suzuki M (2013) The 2b protein of asparagus virus functions as an RNA silencing suppressor against systemic silencing to prove functional synteny with related cucumoviruses. Virology 442:180–188 es_ES
dc.description.references Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725–2729 es_ES
dc.description.references Vives MC, Rubio L, Galipienso L, Navarro L, Moreno P, Guerri J (2002) Low genetic variation between isolates of citrus leaf blotch virus from different host species and of different geographical origins. J Gen Virol 83:2587–2591 es_ES


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