Mostrar el registro sencillo del ítem
dc.contributor.author | Marques, M. Carmen | es_ES |
dc.contributor.author | Perez Amador, Miguel Angel | es_ES |
dc.date.accessioned | 2017-06-22T09:36:19Z | |
dc.date.available | 2017-06-22T09:36:19Z | |
dc.date.issued | 2012 | |
dc.identifier.isbn | 978-1-61779-423-0 | |
dc.identifier.isbn | 978-1-61779-424-7 | |
dc.identifier.issn | 1064-3745 | |
dc.identifier.uri | http://hdl.handle.net/10251/83428 | |
dc.description.abstract | [EN] We have developed an integrated method to generate a normalized cDNA collection enriched in full-length and rare transcripts from citrus, using different species and multiple tissues and developmental stages. Interpretation of ever-increasing raw sequence information generated by modern genome sequencing technologies faces multiple challenges, such as gene function analysis and genome annotation. In this regard, the availability of full-length cDNA clones facilitates functional analysis of the corresponding genes enabling manipulation of their expression and the generation of a variety of tagged versions of the native protein. The development of full-length cDNA sequences has the power to improve the quality of genome annotation, as well as provide tools for functional characterization of genes | es_ES |
dc.description.sponsorship | The authors would like to thank to all participants in the Spanish Citrus Functional Genomic Project, specially to Drs. Javier Forment, Jose Gadea, and Vicente Conejero. This work was funded by grants from the Spanish Government GEN2001-4885-CO5-01 and GEN2001-4885-CO5-02. | |
dc.language | Inglés | es_ES |
dc.publisher | Springer New York | es_ES |
dc.relation.ispartof | Functional Genomics: Methods and Protocols | es_ES |
dc.relation.ispartofseries | Methods in Molecular Biology;815 | |
dc.rights | Reserva de todos los derechos | es_ES |
dc.subject | Library | es_ES |
dc.subject | cDNA | es_ES |
dc.subject | Citrus | es_ES |
dc.subject | Full-length | es_ES |
dc.subject | Normalized | es_ES |
dc.subject | SMART | es_ES |
dc.subject | DSN nuclease | es_ES |
dc.subject | Gateway technology | es_ES |
dc.title | Construction and analysis of full-length and normalized cDNA libraries from citrus | es_ES |
dc.type | Artículo | es_ES |
dc.type | Capítulo de libro | es_ES |
dc.identifier.doi | 10.1007/978-1-61779-424-7_5 | |
dc.relation.projectID | info:eu-repo/grantAgreement/MICYT//GEN2001-4885-C05-01/ES/ESTUDIO DE LA RESPUESTA A ESTRESES BIOTICOS DE CITRICOS MEDIANTE GENOMICA FUNCIONAL/ | es_ES |
dc.relation.projectID | info:eu-repo/grantAgreement/MICYT//GEN2001-4885-C05-02/ES/ESTUDIO DEL DESARROLLO VEGETATIVO Y REPRODUCTIVO DE CITRICOS MEDIANTE GENOMICA FUNCIONAL/ | es_ES |
dc.rights.accessRights | Abierto | es_ES |
dc.contributor.affiliation | Universitat Politècnica de València. Instituto Universitario Mixto de Biología Molecular y Celular de Plantas - Institut Universitari Mixt de Biologia Molecular i Cel·lular de Plantes | es_ES |
dc.description.bibliographicCitation | Marques, MC.; Perez Amador, MA. (2012). Construction and analysis of full-length and normalized cDNA libraries from citrus. Functional Genomics: Methods and Protocols. 815:51-65. https://doi.org/10.1007/978-1-61779-424-7_5 | es_ES |
dc.description.accrualMethod | S | es_ES |
dc.relation.publisherversion | https://doi.org/10.1007/978-1-61779-424-7_5 | es_ES |
dc.description.upvformatpinicio | 51 | es_ES |
dc.description.upvformatpfin | 65 | es_ES |
dc.type.version | info:eu-repo/semantics/publishedVersion | es_ES |
dc.description.volume | 815 | es_ES |
dc.relation.senia | 232697 | es_ES |
dc.identifier.pmid | 22130983 | |
dc.contributor.funder | Ministerio de Ciencia y Tecnología | |
dc.description.references | Carninci P, Kvam C, Kitamura A, Ohsumi T, Okazaki Y, Itoh M, Kamiya M, Shibata K, Sasaki N, Izawa M, Muramatsu M, Hayashizaki Y, and Schneider C (1996) High-efficiency full-length cDNA cloning by biotinylated CAP trapper. Genomics 37 327–336. | es_ES |
dc.description.references | Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, and Hayashizaki Y (2000) Normalization and subtraction of CAP-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 10, 1617–1630. | es_ES |
dc.description.references | Suzuki Y, and Sugano S (2003) Construction of a full-length enriched and a 5’-end enriched cDNA library using the Oligo-capping method. Methods Mol. Biol. 221 73–91. | es_ES |
dc.description.references | Clepet C, Le Clainche I, and Caboche M (2004) Improved full-length cDNA production based on RNA tagging by T4 DNA ligase. Nucleic Acids Res. 32 e6. | es_ES |
dc.description.references | Zhu YY, Machleder EM, Chenchik A, Li R, and Siebert PD (2001) Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction. Biotechniques 30 892–897. | es_ES |
dc.description.references | Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, and Shagin DA (2004) Simple cDNA normalization using Kamchatka crab duplex-specific nuclease. Nucleic Acids Res. 32 e37. | es_ES |
dc.description.references | Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, and Shagin DA (2005) A method for the preparation of normalized cDNA libraries enriched with full-length sequences. Russian J. Bioorg. Chem. 31 170–177. | es_ES |
dc.description.references | Anisimova VE, Rebrikov DV, Zhulidov PA, Staroverov DB, Lukyanov SA, and Shcheglov AS (2006) Renaturation, activation, and practical use of recombinant duplex-specific nuclease from Kamchatka crab. Biochem.-Moscow 71 513–519. | es_ES |
dc.description.references | Toru M, Matsui T, Heidaran MA, and Aaronson SA (1989) An efficient directional cloning system to construct cDNA libraries containing full-length inserts at high frequency. Gene 83 137–146. | es_ES |
dc.description.references | Castelli V, Aury JM, Jaillon O, Wincker P, Clepet C, Menard M, Cruaud C, Quétier F, Scarpelli C, Schächter V, Temple G, Caboche M, Weissenbach J, and Salanoubat M (2004) Whole genome sequence comparisons and “Full-length” cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation. Genome Res. 14 406–413. | es_ES |
dc.description.references | Earley KW, Haag JR, Pontes O, Opper K, Juehne T, Song KM, and Pikaard CS (2006) Gateway-compatible vectors for plant functional genomics and proteomics. Plant J. 45 616–629. | es_ES |
dc.description.references | Karimi M, Inzé D, and Depicker A (2002) GATEWAY™ vectors for Agrobacterium- mediated plant transformation. TRENDS Plant Sci. 7 193–195. | es_ES |
dc.description.references | Hartley JL, Temple GF, and Brasch MA (2000) DNA cloning using in vitro site-specific recombination. Genome Res. 10 1788–1795. | es_ES |
dc.description.references | Marques M C, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, and Perez-Amador MA (2009) A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus. BMC Genomics 10, 428. | es_ES |